PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

ERF

Protein Properties

Length: 180aa MW: 20470.7 Da PI: 6.5182

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.8G224700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.3	4.3e-19	47	99	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y+G+r+++ +g+++AeIrdps ng +r +lg+f taeeAa+a+++a+ ++g+ Prupe.8G224700.1.p 47 TRYRGIRRRP-WGKFAAEIRDPSRNG--ARLWLGTFETAEEAARAYDRAAFGFRGH 99 68******.******98887..********************988886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	3.9E-13	47	99	IPR001471	AP2/ERF domain
CDD	cd00018	5.73E-31	47	108	No hit	No description
PROSITE profile	PS51032	24.869	48	106	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.1E-30	48	107	IPR001471	AP2/ERF domain
SMART	SM00380	5.0E-35	48	113	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	6.54E-23	48	107	IPR016177	DNA-binding domain
PRINTS	PR00367	2.1E-11	49	60	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.1E-11	72	88	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MHYISCMSQA QPIFLPPNLN KDLFLLNMEG KGVENQQKEQ TKVRDQTRYR GIRRRPWGKF 60 AAEIRDPSRN GARLWLGTFE TAEEAARAYD RAAFGFRGHL AILNFPNDYQ YHNPSSSLIS 120 TSSSSSSSPF SAADIGKSTN FGRGQEEEEV IEFEYLDNMV LEELLDTKED HHRQGKPTH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	9e-29	45	160	11	114	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.8G224700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007199104.1	1e-110	ethylene-responsive transcription factor ERF098
Swissprot	Q9LTC5	2e-46	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A251N1U9	1e-132	A0A251N1U9_PRUPE; Uncharacterized protein
STRING	EMJ00303	1e-110	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF270	33	215

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	3e-37	ERF family protein

Link Out ? help Back to Top
Phytozome	Prupe.8G224700.1.p

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]