PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G166900.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 640aa    MW: 72677 Da    PI: 5.4261
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G166900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.7e-13394437755
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +Er+RR+++N++++ Lr l+P+ +      Kl+ a+iL  A+eY+++Lq
  Prupe.8G166900.1.p 394 VAERKRRKKLNERLFALRALVPNiS------KLDRASILGDAIEYVQELQ 437
                         68*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.3E-20137282IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.936387436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.36E-13389439No hitNo description
SuperFamilySSF474594.97E-17390450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-16393442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10394437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-17394450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MDCSSPTKFS PYKKIHFVKC REAPIVFLLD FTPSSKNICT RYRNFCFVAS LLRWGVISRL  60
AFAYEYDDGA AVNYCYQLKF VWISLFVSSS ILVLFFLLIC SVKRGSSHIH PPKKTKHSSN  120
HHLSGGMNIM MIMPSLIQRL RSLVGLKGWD YCVIWKLSED QRFIEWMDCC CSGTEITQYD  180
AGQDLLFPPV LPCRDTMLQH PRTTACDLLA KMPSSLPLDS GIYAETLISN QSSWLNFSNN  240
TCLSTLEETV GTKVLIPIPG GLIELLVTKQ VFEDQHVIDF ITAQYSISME QDTLDNITDP  300
FICSAENGFQ EMEAMERSMM ADETQQHMHM QYMEALAPDM DQQDGNDRQD SIIHDELPAA  360
DGLSDCSDQI DDDEDDAKYQ RRRAGKGPQA KNLVAERKRR KKLNERLFAL RALVPNISKL  420
DRASILGDAI EYVQELQKQA KQLQDELDDH AEDEGPKNSG ITGHPNNIQS EIQSELDPGG  480
PKTDHQHDSV SKQSQDSDVI HDHKTQQMEP QVEVAQLDGN QFFVKVFCEH KPGGFVRLME  540
ALSSLSLEVI NANVTSFRCL VSNVFIVERK DSEMVEADDV RDSLLELTRN PSRWRSEIAK  600
AAENGVGFDN HDDHDHHHHQ HLHNRHFNPF HLHHLPNET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-14385446263Transcription factor MYC2
5gnj_B3e-14385446263Transcription factor MYC2
5gnj_E3e-14385446263Transcription factor MYC2
5gnj_F3e-14385446263Transcription factor MYC2
5gnj_G3e-14385446263Transcription factor MYC2
5gnj_I3e-14385446263Transcription factor MYC2
5gnj_M3e-14385446263Transcription factor MYC2
5gnj_N3e-14385446263Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1380401RRRAGKGPQAKNLVAERKRRKK
2395402ERKRRKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G166900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021810451.10.0transcription factor ABORTED MICROSPORES-like isoform X2
TrEMBLA0A251MYW90.0A0A251MYW9_PRUPE; Uncharacterized protein
STRINGXP_008236126.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42253247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.19e-60bHLH family protein