PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.8G166800.1.p | ||||||||
Common Name | PRUPE_ppa002978mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 621aa MW: 69344.5 Da PI: 4.827 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.7 | 1.4e-10 | 355 | 396 | 8 | 54 |
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +Er+RR+++N+++ Lr+l+P+ + K++Ka+iL A++++k+L Prupe.8G166800.1.p 355 AERKRRKKLNDRLYCLRSLVPNiS------KMDKAAILGDAIDFVKDL 396 7*********************66......***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.4E-18 | 8 | 156 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 15.555 | 347 | 396 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.91E-12 | 349 | 401 | No hit | No description |
SuperFamily | SSF47459 | 7.2E-17 | 350 | 412 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-14 | 353 | 402 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-15 | 355 | 410 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-8 | 355 | 396 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 4.23E-4 | 501 | 563 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048657 | Biological Process | anther wall tapetum cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000978 | Molecular Function | RNA polymerase II core promoter proximal region sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 621 aa Download sequence Send to blast |
MIIIMQNLTE RLRPLVGLKG WDYCVIWKLS ENQRFIELMD CCCSGADENT QTNGGQELLF 60 PVYPVLPCRD TMQHSRTNSC DVLAQLPSSL SLDSGIYAHP LISNQPIWLN SSSNRDSSAM 120 AERDGTRVLV PSAGGLIELF VSKDVSEDQQ VIDYITAQCN ISKEQDTLLG AGCNTSFPVN 180 IQDMSTEIQP HAFPGNENEG NDNLNSNHFQ QPPVVSPSVD HDSNVPYDIS VDRIRLCSAS 240 PMNFLQHVTY NSENSMKNCN SNVYYEQRSH ESLGEMGLQA DADAPNMHNS MHVMEALENM 300 EQQGVEDQDS VQHEAQGGRT ADNSGSDCSD QIDDEDDTKY RRRTGKGPQS KNLFAERKRR 360 KKLNDRLYCL RSLVPNISKM DKAAILGDAI DFVKDLLRQV KELQDELEQH SNDEGPNKKT 420 SANICGNHNN FQPEILNQNG TSITNKPENG DKPPNGFHVG TAGDIGNISK QKQDSDSTND 480 RGQQMEPQVG VTQLDGNEFF VTVFCEHKPG GFVRLMEALD TLGLEVTNAN VTSFRSLVSN 540 VFKVEKKDSE VVQADDVRDS LLEITRNPSS KVWPEMAKAK ASENGSGLDH FHHDDHNHYQ 600 QHHLHNYHAS SYNLQHLYNY * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 340 | 361 | RRRTGKGPQSKNLFAERKRRKK |
2 | 355 | 362 | ERKRRKKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.8G166800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020425409.1 | 0.0 | transcription factor ABORTED MICROSPORES | ||||
Refseq | XP_020425410.1 | 0.0 | transcription factor ABORTED MICROSPORES | ||||
TrEMBL | A0A251MYW2 | 0.0 | A0A251MYW2_PRUPE; Uncharacterized protein | ||||
STRING | EMJ01503 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4225 | 32 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16910.1 | 1e-130 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.8G166800.1.p |
Entrez Gene | 18766566 |