PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G157500.2.p
Common NamePRUPE_ppa008130mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 332aa    MW: 37236.4 Da    PI: 8.1356
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G157500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.4e-13154200455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++YIk+Lq
  Prupe.8G157500.2.p 154 DHIIAERKRREKLSQRFIALSAMVPGL-----KKMDKASVLGDAIKYIKQLQ 200
                         699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.12150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-18154213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-17154216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-11154200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.59E-13155204No hitNo description
SMARTSM003531.9E-15156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEDPYFINQW HMNSLDEVSM LPLAAPFGEN FNQSHFHPNF NLKTSMDSCH SGIDRPMKQL  60
KTDGWSSCKT DQHGSNPQVA SSPNILSFVN SNSTNQMGVL KPKEEAAVCS KSNNSLPSDI  120
LLSQSSFGNQ SYLFKASQGT KRVNTNTRLS TTQDHIIAER KRREKLSQRF IALSAMVPGL  180
KKMDKASVLG DAIKYIKQLQ DKVKTLEEQT RKKNMESVVF VKKTQLFAND DNSSSEENNS  240
SGPFEETLPE IEARFCDNNV MIRIHCEKRK GVVEKTIAEV EKLQLKFINS SVLTFGGCAL  300
DVTIIAQMEV EFSLSVKELV KNLRSAFDMF M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-14154214869Transcription factor MYC2
5gnj_B6e-14154214869Transcription factor MYC2
5gnj_E6e-14154214869Transcription factor MYC2
5gnj_F6e-14154214869Transcription factor MYC2
5gnj_G6e-14154214869Transcription factor MYC2
5gnj_I6e-14154214869Transcription factor MYC2
5gnj_M6e-14154214869Transcription factor MYC2
5gnj_N6e-14154214869Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158163ERKRRE
2159164RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G157500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007200351.10.0transcription factor bHLH25
TrEMBLA0A251MYH30.0A0A251MYH3_PRUPE; Uncharacterized protein
TrEMBLM5W4380.0M5W438_PRUPE; Uncharacterized protein
STRINGEMJ015500.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-63bHLH family protein