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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.8G143600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 361aa MW: 39766.1 Da PI: 5.2573 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.2 | 4e-10 | 284 | 324 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR++iN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Prupe.8G143600.1.p 284 RKRREKINERLRVLQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 324 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.5 | 274 | 323 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.37E-14 | 274 | 339 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-12 | 279 | 333 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.7E-11 | 280 | 329 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.45E-11 | 283 | 328 | No hit | No description |
Pfam | PF00010 | 2.5E-7 | 284 | 324 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0016049 | Biological Process | cell growth | ||||
GO:0048766 | Biological Process | root hair initiation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MYTAEEVDFM AQLLGNFSSS NHPSGTSSMR VPEAFWPGDE SLTMNMSGNH EGSHYSSETS 60 ISDCSNRILF PTSSNESYYL SSDSHPMLVT SNSSMSIDFG SGDGIRNLNS YLIQVNDQCL 120 NQEPSEGNAE EYGGNQPEAV ALEKRRYDMA VQEPAMDDKS NTSKASMKRT QSAENNVNVL 180 SLIINSMWVQ MNKRNIKSKK SLQIITSNNE EDGNAGPNRQ SSSSCCSGDD SNIASHFHEN 240 SQELSPGCTS TSSLSPKEAK ALNLSGKSRA RRGSAIDPQS LYARKRREKI NERLRVLQNL 300 VPNGTKVDIS TMLEEAVHYV KFLQLQIKLL SSDDMWMYAP ICYNGMDLGL DLKLTSPKQS 360 * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 283 | 288 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.8G143600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020409227.1 | 0.0 | transcription factor bHLH84 | ||||
TrEMBL | A0A251MXX7 | 0.0 | A0A251MXX7_PRUPE; Uncharacterized protein | ||||
STRING | XP_008236358.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF807 | 33 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33880.1 | 2e-59 | ROOT HAIR DEFECTIVE 6-LIKE 2 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.8G143600.1.p |