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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.8G136800.1.p | ||||||||
Common Name | PRUPE_ppa015566mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 261aa MW: 28197.2 Da PI: 5.6038 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.6 | 0.00053 | 152 | 189 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ ++++ L++l+ + +K + a++L +A+ YI+ L Prupe.8G136800.1.p 152 RKEKLGERIAALQQLVSPF-----GKTDTASVLHEAMGYIRFL 189 77788899********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.02 | 140 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.21E-5 | 151 | 194 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.2E-7 | 151 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-10 | 151 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MAENDGLEGD HLAVTEGTSF SQLLFAADEG CGLGMDDETF NYTHSSAYST QIKPPKMLCF 60 GNYDHSHGDG LEIGFSETAK KSGVTCSDSS SVYSTSNTII NALPESNNKR RNGLGQESVQ 120 CASTISTTTT ASQRTSKKTK SENPTSTGNA KRKEKLGERI AALQQLVSPF GKTDTASVLH 180 EAMGYIRFLH DQVQVLCSPY LQRLPSLPDG EMEEARKDLR SRGLCLAPVE YTMHVADNNG 240 ADFWSPAMAN NNNNVSSTKY * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.8G136800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007201519.1 | 0.0 | transcription factor bHLH113 isoform X1 | ||||
TrEMBL | M5W0G2 | 0.0 | M5W0G2_PRUPE; Uncharacterized protein | ||||
STRING | EMJ02718 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10321 | 21 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19500.1 | 1e-43 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.8G136800.1.p |
Entrez Gene | 18766527 |