PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G113000.5.p
Common NamePRUPE_ppa006275mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 369aa    MW: 41920.6 Da    PI: 8.8385
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G113000.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.14.3e-151761798
                        E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                        ++p +f++++  +   s+  tl  ++g++W+v +  +k ++++++ +GW+eF +   +++g f++F+++g+s+f  +v++f+
  Prupe.8G113000.5.p  1 MIPENFVKKFRDD--LSTVATLSVPDGNVWRVGI--KKADNKFWFHDGWQEFIERYSIRVGYFLTFRYEGHSSF--TVHIFN 76
                        69********877..888999999**********..**********************************9999..888885 PP
2B359.36.7e-19254343497
                         E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                  B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                         vl ps+  + ++++lp  fae++ +g++     ++l++++gr+W v++ yr+++    l++GW eF  +n+L egD++vF+l + +e  l+
  Prupe.8G113000.5.p 254 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---FIKLQSSDGRQWPVRCLYRGGR--AKLSQGWYEFTLENNLGEGDVCVFELLKMKEVVLK 339
                         78899******************877743...5***************665555..66***********************9887777677 PP

                         EEEE CS
                  B3  94 vkvf 97 
                         v+vf
  Prupe.8G113000.5.p 340 VTVF 343
                         7765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100173.20E-17176No hitNo description
SMARTSM010192.3E-6178IPR003340B3 DNA binding domain
SuperFamilySSF1019365.69E-19176IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.156178IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-18276IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-12276IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-24244344IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.76E-24245344IPR015300DNA-binding pseudobarrel domain
CDDcd100171.57E-22249344No hitNo description
SMARTSM010198.1E-18251346IPR003340B3 DNA binding domain
PROSITE profilePS5086313.719251346IPR003340B3 DNA binding domain
PfamPF023624.8E-17254342IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MIPENFVKKF RDDLSTVATL SVPDGNVWRV GIKKADNKFW FHDGWQEFIE RYSIRVGYFL  60
TFRYEGHSSF TVHIFNLTTA EINYQPNALS STGVSVYRHQ VFEEMEDDDS VEILGSSPKS  120
IVTDSLRDKL FGDCANQLIP GKDYNPPALQ NLFNGSKPKN CTNWPDTGNP HPSKGSGLQA  180
GEDIRSMKKT MRKKRKLDPT VQDSSSQHEK EVEIRFRFYE SASARKRTVT AEERERAINA  240
AKTFEPVNPF CRVVLRPSYL YRGCIMYLPS CFAEKNLNGV SGFIKLQSSD GRQWPVRCLY  300
RGGRAKLSQG WYEFTLENNL GEGDVCVFEL LKMKEVVLKV TVFCVVEAAG FVNQPPQQNA  360
SQAKMIRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-7121734715144B3 domain-containing transcription factor VRN1
4i1k_B1e-7121734715144B3 domain-containing transcription factor VRN1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and at lower levels in aerial parts. {ECO:0000269|PubMed:12114624}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G113000.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007199855.10.0B3 domain-containing transcription factor VRN1 isoform X2
SwissprotQ8L3W11e-128VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLM5VIZ90.0M5VIZ9_PRUPE; Uncharacterized protein
STRINGEMJ010550.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-127B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]