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Plant Transcription
Factor Database
|
Transcription Factor Information
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Basic
Information? help
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| TF ID |
Prupe.8G069300.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 224aa MW: 25302.7 Da PI: 9.0157 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Prupe.8G069300.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 86.2 | 1.9e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+i+n++ rqvtfskRr g++KKA+ELS+LCdae+a+++fs tgkl+ey s
Prupe.8G069300.1.p 9 KKIDNTTARQVTFSKRRRGLFKKAQELSTLCDAEIALVVFSATGKLFEYTS 59
68***********************************************75 PP
|
| 2 | K-box | 54.4 | 5.6e-19 | 96 | 175 | 18 | 97 |
K-box 18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97
+ +a L kei + +e+R+l+Ge+L++L++keLq+Le+ L ++l+++R+ K e++l++i l+ k ++ +enk+L+++
Prupe.8G069300.1.p 96 SSTSAALSKEIAESTHELRKLMGEELQELNMKELQELEKLLGSGLRRVRDAKGEFFLKEITSLKWKGSQMMQENKRLKQM 175
4566789999999999*************************************************************997 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 2.1E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 29.885 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 3.66E-30 | 2 | 74 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 6.2E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 1.97E-38 | 3 | 75 | No hit | No description |
| Pfam | PF00319 | 2.6E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 6.2E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 6.2E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS51297 | 11.528 | 92 | 186 | IPR002487 | Transcription factor, K-box |
| Pfam | PF01486 | 1.1E-17 | 97 | 175 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 224 aa
Download sequence Send
to blast |
MTRRKIQIKK IDNTTARQVT FSKRRRGLFK KAQELSTLCD AEIALVVFSA TGKLFEYTSS 60
SVQQVIERHG LLSSNYDQLN QPSLELQSFG MSQLESSTSA ALSKEIAEST HELRKLMGEE 120
LQELNMKELQ ELEKLLGSGL RRVRDAKGEF FLKEITSLKW KGSQMMQENK RLKQMANRQV 180
QTLELEQGQS SEPIGDFIHS YPSQDHDSSD TSLKLGQAFP NGI*
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
