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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.8G060300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | CAMTA | ||||||||
Protein Properties | Length: 1087aa MW: 121548 Da PI: 5.9359 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 185.3 | 6.4e-58 | 21 | 136 | 4 | 118 |
CG-1 4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 e ++rwl++ ei++iL nf+k+++++e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+een++ Prupe.8G060300.1.p 21 EaQHRWLRPAEICEILSNFQKFHISSEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENEN 111 449**************************************************************************************** PP CG-1 94 fqrrcywlLeeelekivlvhylevk 118 fqrr+yw+Le++l +iv+vhylevk Prupe.8G060300.1.p 112 FQRRSYWMLEQDLMHIVFVHYLEVK 136 **********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 85.995 | 15 | 141 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 2.4E-85 | 18 | 136 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.3E-51 | 21 | 135 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 1.0E-4 | 487 | 589 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 6.07E-16 | 503 | 588 | IPR014756 | Immunoglobulin E-set |
PROSITE profile | PS50297 | 17.926 | 669 | 768 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.9E-6 | 685 | 762 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 6.68E-17 | 687 | 797 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 2.1E-16 | 690 | 798 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 3.82E-14 | 691 | 795 | No hit | No description |
SMART | SM00248 | 3400 | 703 | 732 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.0015 | 736 | 765 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 10.286 | 736 | 768 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 7.9 | 909 | 931 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.95 | 911 | 939 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 2.44E-7 | 911 | 960 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Pfam | PF00612 | 0.0023 | 912 | 930 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0071 | 932 | 954 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.212 | 933 | 957 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 2.3E-4 | 935 | 954 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071275 | Biological Process | cellular response to aluminum ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1087 aa Download sequence Send to blast |
MAERVSYSQG PRLDFQQLLG EAQHRWLRPA EICEILSNFQ KFHISSEPPN RPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSVDVLH CYYAHGEENE NFQRRSYWML 120 EQDLMHIVFV HYLEVKGNRA NAGGIREIDE VTPDLQKGSS WTSSPSNSNC RTPSGNTDYT 180 SPSSNLTSCE DADSGDSHQA SSFHSSFDSQ QMGNGPLTDK ADINLSLHPH LNNHDGQSSF 240 HGGNYRPYFE RDQQCYTDDS TCGIDSQKTL GVGSWEEILE QCTTGLHTVT SHGSKSSIQI 300 ASSGIPPEQQ NITSTEFLAG NSTLKEEFGS PLAFRTNWQI PLEENALQLP KWSLDQSMNL 360 QLPSNLDTRL FEQGTVDVNL RNAPELVTTH PNQRNDQLVQ NNFQAQLTNA ESQCLIISSS 420 EPDIPKDGNI NYAFTLRQQL LDQEEGLKKV DSFSRWVSKE LGEVDDLQMQ SSSGISWSTD 480 ECGNVADDSS LSPSISQDQL FSIVDFSPKW AYTDSEIEVL VIGTFLVSQK QVIKYNWSCM 540 FGEVEVPAQV LANGVLFCFA PPHSAGQVPF YVTCSNRLAC SEVREFDYQV GSTKDLDITN 600 ICNGTTNEIH LHLRLERLLS LRSVSPSGQL VEGVKEKQNL ISKIISLKEE EEYLPLVEPT 660 AVNDLPQHEG MEHLIKLMKE KLYTWLLHKA LEDGKGPSVL DSEGQGVIHL AAALGYDWAI 720 KPIVTAGVSI NFRDVNGWTA LHWAAFYGRE QTVAILISLG AAPGALTDPS PEFPLGRAPA 780 DLASVNRHKG ISGFLAESSL TSYLDSLTMN DAKEGGAAEI SGIRAVKTFS ERIATPGSYS 840 DMPDALSLKD SLTAVTNATQ AADRIHQMFR MQSFDRRQLT EYDTDEFGMP DERAISLIAS 900 KSHKVGQANG HTAAIQIQKK FRGWKKRKEF LIIRQRIVKI QAHVRGHQVR KQYKAITWSV 960 GILEKVILRW RRKGTGLRGF RPDAVAKAPN PQSVPPKDDD YDFLKKGRKQ TEERLQKALT 1020 RVKSMVQYPE GRAQYRRLLN VVEGFRETKV SDMAMDGSEL KVEGGDDLID IDKLLDDDTF 1080 MSIAFD* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, old leaves, petals, sepals, top of carpels, stigmas, stamen filaments, anthers and siliques, but not in pollen. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00043 | PBM | Transfer from AT5G64220 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.8G060300.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020425341.1 | 0.0 | calmodulin-binding transcription activator 2 | ||||
Swissprot | Q6NPP4 | 0.0 | CMTA2_ARATH; Calmodulin-binding transcription activator 2 | ||||
TrEMBL | A0A251MWZ5 | 0.0 | A0A251MWZ5_PRUPE; Uncharacterized protein | ||||
STRING | XP_008237378.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7406 | 26 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
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Phytozome | Prupe.8G060300.1.p |
Publications ? help Back to Top | |||
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