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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.8G035500.1.p | ||||||||
Common Name | PRUPE_ppa006028mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 433aa MW: 48337 Da PI: 4.279 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 155.9 | 1.8e-48 | 6 | 134 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 l+pGfrF+Ptd elv++yLk+k+ gk+l + +vi+evdiyk++PwdLp k + + ++ +wyfF++r+kky++g+r +rat+ gyWk+tgkd Prupe.8G035500.1.p 6 LAPGFRFKPTDVELVQYYLKRKLLGKRLGF-KVIAEVDIYKYDPWDLPdKsCWDCGDLKWYFFCPREKKYRSGNRIQRATEGGYWKTTGKD 95 579************************999.99**************96345666888********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++vl +ge vg ktL+f++grap+g +t+Wvmheyrle Prupe.8G035500.1.p 96 RSVLY-SGEIVGWIKTLIFHTGRAPSGDRTNWVMHEYRLE 134 *****.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-57 | 3 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.759 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.6E-25 | 8 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MGKSSLAPGF RFKPTDVELV QYYLKRKLLG KRLGFKVIAE VDIYKYDPWD LPDKSCWDCG 60 DLKWYFFCPR EKKYRSGNRI QRATEGGYWK TTGKDRSVLY SGEIVGWIKT LIFHTGRAPS 120 GDRTNWVMHE YRLEDQGLAD RGVPLDSYVL CMIFQKEGLG PRIGAQYGAP FKEEDWSDDE 180 VEITSEAVQV AITPEPDLGL PCNNVSPTAT NAHYVGDIGI GPSGSGIYDI LPPFCEVSQP 240 VSSNYVTLEM PLASVGDDII SMFDCFTEES TLYIDEPKKV ESEGRLETAQ NANMPSTHSP 300 EVICAGPSFE SCGFDVLRPC NVNESVSCNF VTMENPPASN GDETLPIMDC FAEESAFLVN 360 DNGKNEELNN PEHFGNATPH FNTSNIYEDL GDLENLGRVG EVGYNFCSEP DSRSHFLELY 420 DLDQPQHPNL FF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-45 | 5 | 157 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-45 | 5 | 157 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-45 | 5 | 157 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-45 | 5 | 157 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-45 | 5 | 157 | 19 | 169 | NAC domain-containing protein 19 |
3swm_B | 3e-45 | 5 | 157 | 19 | 169 | NAC domain-containing protein 19 |
3swm_C | 3e-45 | 5 | 157 | 19 | 169 | NAC domain-containing protein 19 |
3swm_D | 3e-45 | 5 | 157 | 19 | 169 | NAC domain-containing protein 19 |
3swp_A | 3e-45 | 5 | 157 | 19 | 169 | NAC domain-containing protein 19 |
3swp_B | 3e-45 | 5 | 157 | 19 | 169 | NAC domain-containing protein 19 |
3swp_C | 3e-45 | 5 | 157 | 19 | 169 | NAC domain-containing protein 19 |
3swp_D | 3e-45 | 5 | 157 | 19 | 169 | NAC domain-containing protein 19 |
4dul_A | 3e-45 | 5 | 157 | 16 | 166 | NAC domain-containing protein 19 |
4dul_B | 3e-45 | 5 | 157 | 16 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.2571 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the epidermal cells of the root apical region. {ECO:0000269|PubMed:20388856}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00583 | DAP | Transfer from AT5G64060 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.8G035500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007201045.1 | 0.0 | NAC domain-containing protein 82 | ||||
Swissprot | Q9FY82 | 6e-88 | NAC82_ARATH; NAC domain-containing protein 82 | ||||
TrEMBL | M5VM48 | 0.0 | M5VM48_PRUPE; Uncharacterized protein | ||||
STRING | EMJ02244 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3302 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64060.1 | 1e-87 | NAC domain containing protein 103 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.8G035500.1.p |
Entrez Gene | 18767392 |
Publications ? help Back to Top | |||
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