PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G028800.1.p
Common NamePRUPE_ppa021097mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 591aa    MW: 66957 Da    PI: 7.2551
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G028800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix932.9e-2966150187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW++qe+laL+++r++m+ ++r+++lk+plWe+vs+k+ e+g+ rs+k+Ckek+en+ k+++++keg++++  ++ +t+++fd+lea
  Prupe.8G028800.1.p  66 RWPRQETLALLKIRSQMDAAFRDSSLKAPLWEDVSRKLGEHGYYRSAKKCKEKFENVYKYHRRTKEGRSGK--QEGKTYRFFDELEA 150
                         8********************************************************************96..45557******985 PP
2trihelix100.61.2e-31413497186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         rW++ ev aLi++r+ ++ r++++  k+ lWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++k r +e+s+tcpyf+qle
  Prupe.8G028800.1.p 413 RWPRVEVEALINLRTCLDVRYQEAGPKGSLWEEISAGMRRLGYNRSAKRCKEKWENINKYFKKVKESSKTR-PEDSKTCPYFNQLE 497
                         8********************************************************************97.99***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007177.1E-463125IPR001005SANT/Myb domain
CDDcd122031.78E-2365130No hitNo description
PROSITE profilePS500906.81865123IPR017877Myb-like domain
PfamPF138375.9E-1965150No hitNo description
SMARTSM007170.0075410472IPR001005SANT/Myb domain
PfamPF138372.7E-21412498No hitNo description
CDDcd122033.05E-27413477No hitNo description
PROSITE profilePS500906.957413470IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MPAVDVPVPD SSSTMLAAGS SSGEGVVGVV REGSHETTAV LSNSVQEDKD GRVDDLRDRN  60
LYGGNRWPRQ ETLALLKIRS QMDAAFRDSS LKAPLWEDVS RKLGEHGYYR SAKKCKEKFE  120
NVYKYHRRTK EGRSGKQEGK TYRFFDELEA FDQQNNHPSV PPKPQVLLWP NNHHHPNNPT  180
VVSHVITSVV PLSSTPNMMA TTNGSHLNGS HISPPPINSL PPQVTKPVNL YHQNLNGFKP  240
SLATSNLFSS STSSTASDEE FQVQQSGKKK RKWKYFFRRL TKEVLEKQEK LQEKFLEAIA  300
KSEHQRTVRE EAWRMQEMAR LDKEHQILAQ ERSSAAAKDA AVIEFLQKVS GQQNVTNNIQ  360
AIEVNRTIPS RPQPLPVLMP PPPPAPVAVI TTSFEVPRLD KGDNSTIPPG STRWPRVEVE  420
ALINLRTCLD VRYQEAGPKG SLWEEISAGM RRLGYNRSAK RCKEKWENIN KYFKKVKESS  480
KTRPEDSKTC PYFNQLEDLY RKKNMNNSSH VGYVEKPLPQ AILQPLIKVQ PDQPVFEAIE  540
RENGDKNEED EDGESTEEED HLDRSNDDDQ DEQMGIVTNY KESSMEMVES *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G028800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007200087.10.0trihelix transcription factor GT-2
SwissprotQ391171e-138TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLM5VKC50.0M5VKC5_PRUPE; Uncharacterized protein
STRINGEMJ012860.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-118Trihelix family protein