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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Prupe.8G028700.1.p |
Common Name | PRUPE_ppa002848mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family |
Trihelix |
Protein Properties |
Length: 631aa MW: 70569.9 Da PI: 6.4843 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Prupe.8G028700.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 92.3 | 4.8e-29 | 62 | 146 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW++qe+laL+++r++m+ ++r+++ k+plW+evs+k+++ g++rs+k+Ckek+en+ k+++++keg+ ++++++ t+++fdqlea
Prupe.8G028700.1.p 62 RWPRQETLALLQIRSDMDVAFRDASVKGPLWDEVSRKLAALGYHRSAKKCKEKFENVYKYHRRTKEGRTGKSEGK--TYRFFDQLEA 146
8********************************************************************975544..6*******85 PP
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2 | trihelix | 104.7 | 6.6e-33 | 430 | 514 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
rW+k ev+aLi++r++++++++++ k+plWee+s +mr+ g++rs+k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ql+
Prupe.8G028700.1.p 430 RWPKVEVQALIKLRTSLDSKYQENGPKGPLWEEISGAMRKLGYNRSSKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLD 514
8********************************************************************97.99**********98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0010192 | Biological Process | mucilage biosynthetic process |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 631 aa
Download sequence Send
to blast |
MLGDSSVLGS AISRDATTTA AVAVPEGGGG GGGSNSGEDT FRGGGGGDDL LGSGERSFGG 60 NRWPRQETLA LLQIRSDMDV AFRDASVKGP LWDEVSRKLA ALGYHRSAKK CKEKFENVYK 120 YHRRTKEGRT GKSEGKTYRF FDQLEALENQ PQTPGTTHHH QAKPHHQSTM AAAAATMATM 180 ASTIPSSAAP HPIISNVSSQ AIAAPTLNLA APNSFPPTNP IVLPPPPPTT TNPTNNPHHH 240 HHNTFSSSFP NISADLSTSS STSSDEDLEG RAKRKRKWKD FFQRLMKEVI QKQEDLQKRF 300 LEAIEKREHE KMVREEAWRM QEMARVNRER EILAQERSIA AAKDAAVMSF LQKISEQQQN 360 PNQTPPPGQS QINNNLLQLQ PPPLVPPPPR QPAPQPQPQP QQPVTNFDLV TKPNNNGENN 420 NLSSPASSSR WPKVEVQALI KLRTSLDSKY QENGPKGPLW EEISGAMRKL GYNRSSKRCK 480 EKWENINKYF KKVKESNKRR PEDSKTCPYF HQLDSLYRER NKFDHNNVNP KPENSVPLMV 540 RPEQQWPPPT PQQQQQQDHQ NMDIVHHHHD HQNQEDDHHD HQDKENIIGG DEDEEEEDDD 600 DEEDEEEDEG DGNYEIVANK PAPVGAAAAE *
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM433476 | 5e-37 | AM433476.2 Vitis vinifera contig VV78X257449.9, whole genome shotgun sequence. |