PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G016100.1.p
Common NamePRUPE_ppa016398mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 362aa    MW: 41166.5 Da    PI: 9.5448
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G016100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.9e-181560147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        rg W + Ede+l ++v+q+G  +W++Ia++++ gR++k+c++rw++ 
  Prupe.8G016100.1.p 15 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 60
                        899*****************************.***********996 PP
2Myb_DNA-binding58.71.3e-1867110146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         r ++++eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ 
  Prupe.8G016100.1.p  67 RRPFSEEEEERLLAAHRIHGNK-WALIARLFP-GRTDNAVKNHWHV 110
                         679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.6341061IPR017930Myb domain
SuperFamilySSF466891.72E-2913108IPR009057Homeodomain-like
SMARTSM007178.4E-151463IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-271668IPR009057Homeodomain-like
CDDcd001677.52E-141859No hitNo description
PfamPF139212.1E-171878No hitNo description
PROSITE profilePS5129427.44162116IPR017930Myb domain
SMARTSM007174.9E-1666114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-2169114IPR009057Homeodomain-like
CDDcd001671.29E-778109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MDEYGDEAKS TSCPRGHWRP AEDEKLRQLV EQYGAQNWNS IAEKLQGRSG KSCRLRWFNQ  60
LDPRINRRPF SEEEEERLLA AHRIHGNKWA LIARLFPGRT DNAVKNHWHV IMARRQREQS  120
KVCGKRSYQD FCNDHSSNTS SISNNFDVSR KFKSQGELRS SSSIGFDQNS STKFFEFRNP  180
NKDRTTMFMD SRHTSSSPYN WNFATMSTTS NNAASSSVGL LGRERRDYFN NVISSNNNIP  240
GCSKGSDHQF VHRRNNPTTS SFMYGSYIGS TSAFGLPNYK RVNVPSPFGC LGLGDHINRP  300
EQHGRTFKKE LANFCDNAST LAKWRVAATA KFGDHDCQDH ESIDHHKETP FIDFLGVGIS  360
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-31151157107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G016100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007201137.10.0transcription factor MYB44
TrEMBLM5VN750.0M5VN75_PRUPE; Uncharacterized protein
STRINGEMJ023360.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.15e-62myb domain protein 52