PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 665aa MW: 77414.9 Da PI: 7.6758

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.8G014900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.8	8.4e-19	42	128	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YA++vGF ++k++skk + ge + t+ Cs++g ++++ ++ ++ ++ +++Cka+l+ dg+w+v++++l+HnH l+p Prupe.8G014900.1.p 42 DFYKKYANRVGFPMKKRSSKKG-DFGELKYVTLSCSRSGIPQSTASN---VLKPYPSIKCNCKAQLRAGICLDGRWKVNSVKLDHNHGLNP 128 6*************998887.8888************9888...8999*******************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.3E-16	42	128	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.1E-37	249	342	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 665 aa Download sequence Send to blast
MSEENDEVEI GETGLEKTMS PEETTQEPKV NMIFNTVDEV LDFYKKYANR VGFPMKKRSS 60 KKGDFGELKY VTLSCSRSGI PQSTASNVLK PYPSIKCNCK AQLRAGICLD GRWKVNSVKL 120 DHNHGLNPNN ARYFRMNRAI SSYMKRKIEV NDRAGIRVNK NYNSMVVEAG GHENMSFMEK 180 DCRNYINKVR RLQLGEGDAT AIQKYFLKMQ AQNANFFYAI DLDESGRLRN VFWADSRSRA 240 AYEEFGDAIT FDTTYLTNKY DMPFAPFVGV NHHGHSILLG CGLISSEDTD TFVWLFKVWL 300 ACMSGLAPCG IITDQDRAMK NAIEIVFPNT RHRWCLWHIM KKLHEKLKSY KHYESIKFAL 360 ENIVYDSLTN IEFEDRWKEM IEKYELQSND WLRGLYDERR RWVPSFVKGS FWAGMSTTQR 420 SESMNAFFDD HVNSKTTLKQ FVEQYENALM TKVEKENQAD YKSSSADIQC STHYFMEKQA 480 QGVYTIAKFK EFQNELTSKM YCEVVDTKED GAFLKYQISE DMIIAGKKKS VNFTVIFHEF 540 DSEVKCNCSK FEFRGILWRH AIYFLIKHKM DLIPDKYILR RWRKDVTRRH TKIKISYNES 600 NATLEAHQCD KMQKTFDEIK ELAADSEEKC VIVMAWMQKL KEQLSNHDND SQNAQDSHGG 660 MDDD*

Sequence ? help Back to Top

Protein Sequence Length: 665 aa Download sequence Send to blast

MSEENDEVEI GETGLEKTMS PEETTQEPKV NMIFNTVDEV LDFYKKYANR VGFPMKKRSS  60
KKGDFGELKY VTLSCSRSGI PQSTASNVLK PYPSIKCNCK AQLRAGICLD GRWKVNSVKL  120
DHNHGLNPNN ARYFRMNRAI SSYMKRKIEV NDRAGIRVNK NYNSMVVEAG GHENMSFMEK  180
DCRNYINKVR RLQLGEGDAT AIQKYFLKMQ AQNANFFYAI DLDESGRLRN VFWADSRSRA  240
AYEEFGDAIT FDTTYLTNKY DMPFAPFVGV NHHGHSILLG CGLISSEDTD TFVWLFKVWL  300
ACMSGLAPCG IITDQDRAMK NAIEIVFPNT RHRWCLWHIM KKLHEKLKSY KHYESIKFAL  360
ENIVYDSLTN IEFEDRWKEM IEKYELQSND WLRGLYDERR RWVPSFVKGS FWAGMSTTQR  420
SESMNAFFDD HVNSKTTLKQ FVEQYENALM TKVEKENQAD YKSSSADIQC STHYFMEKQA  480
QGVYTIAKFK EFQNELTSKM YCEVVDTKED GAFLKYQISE DMIIAGKKKS VNFTVIFHEF  540
DSEVKCNCSK FEFRGILWRH AIYFLIKHKM DLIPDKYILR RWRKDVTRRH TKIKISYNES  600
NATLEAHQCD KMQKTFDEIK ELAADSEEKC VIVMAWMQKL KEQLSNHDND SQNAQDSHGG  660
MDDD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.8G014900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007199084.2	0.0	protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A251MR68	0.0	A0A251MR68_PRUPE; Uncharacterized protein
STRING	EMJ00283	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-128	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Prupe.8G014900.1.p
Entrez Gene	18767157