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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Prupe.8G002600.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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| Family |
Whirly |
| Protein Properties |
Length: 230aa MW: 25006 Da PI: 10.4146 |
| Description |
Whirly family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Prupe.8G002600.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Whirly | 199.2 | 5.5e-62 | 55 | 190 | 2 | 137 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrk 92
++k+kaal++++v+ptf++l+sgnl+++r+G ++l++++a++erkydWek q+falsatev++l++l++k+sce+fhdp++k+sn+G+vrk
Prupe.8G002600.1.p 55 IFKGKAALSLNPVLPTFTKLESGNLVVSRRGVVMLKFTPAIGERKYDWEKNQVFALSATEVGSLISLGPKDSCELFHDPSMKSSNAGQVRK 145
9****************************************************************************************** PP
Whirly 93 alkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
+l+++ ++dGsG++v+l+v n+l+k++e+f vPv+ aefav++++
Prupe.8G002600.1.p 146 SLSIKCHADGSGYLVSLAVVNNLLKTKENFIVPVTAAEFAVMKTA 190
*******************************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 230 aa
Download sequence Send
to blast |
MMKVLRLLSS SRNQFPTRGA LSMHAYTHSS SFSTASKSFS VKGTSAHNVF ASFNIFKGKA 60
ALSLNPVLPT FTKLESGNLV VSRRGVVMLK FTPAIGERKY DWEKNQVFAL SATEVGSLIS 120
LGPKDSCELF HDPSMKSSNA GQVRKSLSIK CHADGSGYLV SLAVVNNLLK TKENFIVPVT 180
AAEFAVMKTA CSFVLPHIMG WDRLMSNMPT VVGGQQSKVV PQLLDEWDR*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4kop_A | 1e-83 | 49 | 208 | 11 | 170 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_B | 1e-83 | 49 | 208 | 11 | 170 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_C | 1e-83 | 49 | 208 | 11 | 170 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| 4kop_D | 1e-83 | 49 | 208 | 11 | 170 | Single-stranded DNA-binding protein WHY2, mitochondrial |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
