 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Prupe.8G002500.1.p |
| Common Name | PRUPE_ppa026376mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
| Family |
NAC |
| Protein Properties |
Length: 379aa MW: 42895.6 Da PI: 7.7029 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Prupe.8G002500.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 171.1 | 3.3e-53 | 9 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88
+ppGfrFhPtdeel+++yLkkkv+ +k+++ evi+evd++k+ePw+L++ ++ + ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+
Prupe.8G002500.1.p 9 VPPGFRFHPTDEELLHYYLKKKVSFQKFDM-EVIREVDLNKMEPWELQErcRIGStPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGR 98
69****************************.99**************963433332556******************************** PP
NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
dk + + + +++g++ktLvfy+grap+g+ktdW+mheyrle
Prupe.8G002500.1.p 99 DKCIRN-TFKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 138
*****9.8899****************************85 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0048829 | Biological Process | root cap development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 379 aa
Download sequence Send
to blast |
MANSSTGGVP PGFRFHPTDE ELLHYYLKKK VSFQKFDMEV IREVDLNKME PWELQERCRI 60
GSTPQNEWYF FSHKDRKYPT GSRTNRATNA GFWKATGRDK CIRNTFKKIG MRKTLVFYRG 120
RAPHGQKTDW IMHEYRLEDG DDPQGNLSSE DGWVICRVFK KKNLFKVGNE GGSSSMNSSD 180
HQQLNNTSST NQARSFMHTH RDNEYLLRQQ HSQAFELNNP GLHYAHLQPP PQYSLFQPQA 240
LIPTHKPIAG YDYTQLPSDD SPGHGMVKQL MTNPRDCESG SESLRYQACE PGLEVGTCEP 300
NQAPMVAGGG GRDHHDQGGM NEWGMLDRLV TSHLGNDQDS SSKGARYDQN ANAAASSVTQ 360
INNHLSLRGE MDFWGYGK*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 4e-51 | 9 | 163 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 4e-51 | 9 | 163 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 4e-51 | 9 | 163 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 4e-51 | 9 | 163 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 4e-51 | 9 | 163 | 17 | 167 | NAC domain-containing protein 19 |
| 4dul_B | 4e-51 | 9 | 163 | 17 | 167 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Detectable in lateral root development when they reach 10 mm long. {ECO:0000269|PubMed:20197506}. |
| Uniprot | TISSUE SPECIFICITY: Expressed throughout the root cap, in both columella (COL) and lateral root cap (LRC) cells, with higher levels in the COL-adjoining LRC than the upper LRC. Also present at low levels expression in the tips of cotyledons and the cotyledon vasculature, as weel as in vasculature of the first pair of true leaves and at the hydathodes. {ECO:0000269|PubMed:20197506}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
