PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 456aa MW: 47613.5 Da PI: 6.9027

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.7G260800.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.9	6.3e-12	244	289	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Prupe.7G260800.2.p 244 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 289 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.27E-13	237	293	No hit	No description
SuperFamily	SSF47459	5.5E-17	237	299	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.39	239	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-16	241	298	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-9	244	289	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	245	294	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence Send to blast
MQPCSKEMQD MNSLLNSSPS SQLSLQDHHR HLQLQPQQQS HSHSHSHSRP HLHNSHSQMH 60 PQIPSPSPAH FDSASHDDFL EQMLSTLGPS SCSWADDTPP SNSDNVVFTY DDSANLATKF 120 RSQQISAGAG ASKSASTSAA AAAAMMLQHQ LMMSRSTSAD SGFVPMALSL GNGDFDRSNN 180 DVVEGSSSFK SPNPVGGSLQ AQNYGGPGAA MNQGPASGSG GGGGAPAQAR PRVRARRGQA 240 TDPHSIAERL RRERIAERMK ALQELVPNAN KTDKASMLDE IIDYVKFLQL QVKVLSMSRL 300 GGAAAVAPLV ADVSSEGGGD CIQASANGGT RGRSSNGNQT ASSSNDNSMT VTEHQVAKLM 360 EEDMGSAMQY LQGKGLCLMP ISLATAISTA TCHTRNPLIH NNNNNNNNNN NAVMASNGGE 420 GPSSPSMSVL TVQSATMGNG GVDGSVKDAT SVSKP*

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence Send to blast

MQPCSKEMQD MNSLLNSSPS SQLSLQDHHR HLQLQPQQQS HSHSHSHSRP HLHNSHSQMH  60
PQIPSPSPAH FDSASHDDFL EQMLSTLGPS SCSWADDTPP SNSDNVVFTY DDSANLATKF  120
RSQQISAGAG ASKSASTSAA AAAAMMLQHQ LMMSRSTSAD SGFVPMALSL GNGDFDRSNN  180
DVVEGSSSFK SPNPVGGSLQ AQNYGGPGAA MNQGPASGSG GGGGAPAQAR PRVRARRGQA  240
TDPHSIAERL RRERIAERMK ALQELVPNAN KTDKASMLDE IIDYVKFLQL QVKVLSMSRL  300
GGAAAVAPLV ADVSSEGGGD CIQASANGGT RGRSSNGNQT ASSSNDNSMT VTEHQVAKLM  360
EEDMGSAMQY LQGKGLCLMP ISLATAISTA TCHTRNPLIH NNNNNNNNNN NAVMASNGGE  420
GPSSPSMSVL TVQSATMGNG GVDGSVKDAT SVSKP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	248	253	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.7G260800.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	9e-32	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020424137.1	0.0	transcription factor bHLH69 isoform X2
Swissprot	Q9ZUG9	9e-90	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A251NH58	0.0	A0A251NH58_PRUPE; Uncharacterized protein
STRING	XP_008242964.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	1e-61	LJRHL1-like 1

Link Out ? help Back to Top
Phytozome	Prupe.7G260800.2.p
Entrez Gene	18770899

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]