PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.7G260800.1.p | ||||||||
Common Name | PRUPE_ppa005254mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 492aa MW: 51234.3 Da PI: 6.8883 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.8 | 7e-12 | 280 | 325 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Prupe.7G260800.1.p 280 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 325 99***********************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.15E-17 | 273 | 335 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.88E-13 | 273 | 329 | No hit | No description |
PROSITE profile | PS50888 | 17.39 | 275 | 324 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-16 | 277 | 334 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.4E-9 | 280 | 325 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-13 | 281 | 330 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048767 | Biological Process | root hair elongation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 492 aa Download sequence Send to blast |
MQPCSKEMQD MNSLLNSSPS SQLSLQDHHR HLQLQPQQQS HSHSHSHSRP HLHNSHSQMH 60 PQIPSPSPAH FDSASHDDFL EQMLSTLGPS SCSWADDTPP SNSDNVVFTY DDSANLATKF 120 RSQQISAGAG ASKSASTSAA AAAAMMLQHQ LMMSRSTSAD SGFVPMALSL GNGDFDRSNN 180 DVVEGSSSFK SPNPVGGEGA SSVQALFNGF SGSLHGGATT QSPNQHFHQP QGGSLQAQNY 240 GGPGAAMNQG PASGSGGGGG APAQARPRVR ARRGQATDPH SIAERLRRER IAERMKALQE 300 LVPNANKTDK ASMLDEIIDY VKFLQLQVKV LSMSRLGGAA AVAPLVADVS SEGGGDCIQA 360 SANGGTRGRS SNGNQTASSS NDNSMTVTEH QVAKLMEEDM GSAMQYLQGK GLCLMPISLA 420 TAISTATCHT RNPLIHNNNN NNNNNNNAVM ASNGGEGPSS PSMSVLTVQS ATMGNGGVDG 480 SVKDATSVSK P* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 284 | 289 | RLRRER |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00659 | PBM | Transfer from Pp3c14_15890 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.7G260800.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 1e-31 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020424135.1 | 0.0 | transcription factor bHLH66 isoform X1 | ||||
Swissprot | Q9ZUG9 | 2e-93 | BH066_ARATH; Transcription factor bHLH66 | ||||
TrEMBL | A0A251NH78 | 0.0 | A0A251NH78_PRUPE; Uncharacterized protein | ||||
STRING | XP_008242964.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4778 | 33 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 6e-62 | LJRHL1-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.7G260800.1.p |
Entrez Gene | 18770899 |
Publications ? help Back to Top | |||
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