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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.7G259300.1.p | ||||||||
Common Name | PRUPE_ppa018934mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ARR-B | ||||||||
Protein Properties | Length: 696aa MW: 76316.6 Da PI: 5.6094 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88.3 | 7.4e-28 | 211 | 264 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W++eLH +Fv av+qL G e+A+Pk+il+lm+v+gLt+e+v+SHLQkYRl Prupe.7G259300.1.p 211 KPRVVWSKELHGKFVAAVHQL-GLERAVPKKILDLMNVQGLTRENVASHLQKYRL 264 79*******************.********************************7 PP | |||||||
2 | Response_reg | 84.6 | 2.9e-28 | 26 | 134 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 vl vdD+p+ ++ll+ +l++ +y +v++++++ eal +l+e++ +Dl+++D++mp+mdG++ll+ + e +lp+i++++h+++e++ + Prupe.7G259300.1.p 26 VLAVDDNPICLRLLEGLLQNCQY-QVTTTTQAVEALLMLRESRnrFDLVITDVSMPDMDGFKLLELLGLEM-DLPVIMLSGHSDKELVMKG 114 799********************.9**************999889*********************96644.8****************** PP HHTTESEEEESS--HHHHHH CS Response_reg 90 lkaGakdflsKpfdpeelvk 109 ++ Ga d+l Kp+ +eel++ Prupe.7G259300.1.p 115 ISHGACDYLLKPVRKEELTN 134 *****************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 3.1E-158 | 1 | 695 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 2.13E-36 | 23 | 146 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 6.5E-43 | 23 | 164 | No hit | No description |
SMART | SM00448 | 3.1E-33 | 24 | 136 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 44.668 | 25 | 140 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 3.4E-25 | 26 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.70E-29 | 27 | 140 | No hit | No description |
SuperFamily | SSF46689 | 4.3E-19 | 208 | 268 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.3 | 208 | 267 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-29 | 209 | 268 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.2E-24 | 211 | 264 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.9E-7 | 213 | 263 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 696 aa Download sequence Send to blast |
MTVKAQRGGL IGEDGAMDRF PVGMRVLAVD DNPICLRLLE GLLQNCQYQV TTTTQAVEAL 60 LMLRESRNRF DLVITDVSMP DMDGFKLLEL LGLEMDLPVI MLSGHSDKEL VMKGISHGAC 120 DYLLKPVRKE ELTNIWQHVI RRKKFDSKDQ NKSSSQDKAC HETEGGQGVS PAGSSDQNGK 180 FNRKRKDQNE DEEEEYEDDE HENEDPSTQK KPRVVWSKEL HGKFVAAVHQ LGLERAVPKK 240 ILDLMNVQGL TRENVASHLQ KYRLCLKRLS STATQQASMV AAFGGKDSSY IRMGALDGFG 300 DLRSLAGSRR LSNATLSPYA PGGMLGRLNS PAGLSIRGIT SSGLVQPGHS QNLSNSISNL 360 VKLQPALPAN QSPNLYESIP TSLELNQLQQ GKHTAHIGES SPNNDPTSYS VPSSFPDTSV 420 SVSSIHSDSI TSSNPLILHR NPQQAFGMGV FGNRSSLSLA SLNPESFDIG ISSNFLDDNR 480 CSESWQVAVQ LSKFPSNDLP MSEPFDHGQL HANNLGLSST RPQIGNSPND FSSLSVLPGP 540 AEELRGNVWN QEGLIGDVVP TMDCTPKQRW EEHKRDYKHN LNLTFSATNP TVSANVIVSP 600 LSQSLDQSDA VCSKKMNSSL FDQLNGATPT VMQLSEVEKS AMGTKMKPSE DYLWEQTKSH 660 DGLVQNSYES LNDIMGAIMK GGQNENMLMD GEFWI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-25 | 207 | 270 | 1 | 64 | ARR10-B |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.7G259300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007204866.2 | 0.0 | two-component response regulator ARR12 | ||||
TrEMBL | A0A251NH41 | 0.0 | A0A251NH41_PRUPE; Two-component response regulator | ||||
STRING | EMJ06065 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF956 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-100 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.7G259300.1.p |
Entrez Gene | 18769462 |