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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.7G245200.2.p | ||||||||
Common Name | PRUPE_ppa012028mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | YABBY | ||||||||
Protein Properties | Length: 137aa MW: 15614.4 Da PI: 9.7632 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 139.4 | 4.1e-43 | 13 | 109 | 76 | 170 |
YABBY 76 kveeenlksnvekeesastsvssekl..senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfP 164 + ++ n++ ++ + es s+s+ ++k+ + + ++v++ v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP Prupe.7G245200.2.p 13 QAQNYNYNAQNYRIESGSSSKCNKKIatRDPTADHVTEERGVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 103 44555555544444454555555555325556677888888************************************************** PP YABBY 165 kihfgl 170 +ihfgl Prupe.7G245200.2.p 104 HIHFGL 109 ****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.6E-40 | 17 | 109 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.53E-8 | 55 | 102 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 7.6E-5 | 57 | 103 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MAAAFQSLWP DVQAQNYNYN AQNYRIESGS SSKCNKKIAT RDPTADHVTE ERGVNRPPEK 60 RQRVPSAYNQ FIKEEIQRIK ANNPDISHRE AFSTAAKNWA HFPHIHFGLM LETNNQPKLD 120 NDSEKHLISR AALLNK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.7G245200.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007202630.1 | 8e-99 | axial regulator YABBY 5 | ||||
Swissprot | Q8GW46 | 2e-50 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A251NG97 | 1e-97 | A0A251NG97_PRUPE; Uncharacterized protein | ||||
TrEMBL | M5VR92 | 2e-97 | M5VR92_PRUPE; Uncharacterized protein | ||||
STRING | EMJ03829 | 3e-98 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 3e-49 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.7G245200.2.p |
Entrez Gene | 18770811 |
Publications ? help Back to Top | |||
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