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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.7G231100.1.p | ||||||||
Common Name | PRUPE_ppa008830mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | HSF | ||||||||
Protein Properties | Length: 334aa MW: 37851.5 Da PI: 5.7397 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 109.8 | 1.9e-34 | 13 | 104 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 F++k+y++++d+++++li+w + +nsf+v+d+ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+++ Prupe.7G231100.1.p 13 FVMKTYQMVNDPTTDKLITWGRANNSFIVVDPLDFSQRLLPAYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANECFLRGQTH 94 9********************999*****************************************999.........************** PP XXXXXXXXXX CS HSF_DNA-bind 93 llekikrkks 102 ll+++ r+k+ Prupe.7G231100.1.p 95 LLRNVVRRKH 104 *****99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 9.8E-55 | 9 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 8.43E-34 | 10 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.6E-37 | 10 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.6E-18 | 13 | 36 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.3E-29 | 13 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.6E-18 | 51 | 63 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 52 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.6E-18 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MMMEENNNVI APFVMKTYQM VNDPTTDKLI TWGRANNSFI VVDPLDFSQR LLPAYFKHNN 60 FSSFVRQLNT YGFRKVDPDR WEFANECFLR GQTHLLRNVV RRKHMGKNSY SNSNSNSTTC 120 LLQGKHEELD DEEIVMEIAR LKQEQKALEE EMENMNKRLE ATERRPQQMM AFLHKVAEDP 180 EILPRIMLEK DRTFRAQLGE KKRRVMMITS TSSSSSGMGA TNSVKTEDED DGTVGVISSS 240 PEPGFEMESF YSTSPETSTA REWGTQRRVV DRVRAVQDPY NMNPTVSGHV IGNSSNSGYG 300 YGNRNVGAGV GYLTEEPIPA PPPYPFSLLE GGF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-25 | 10 | 102 | 26 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-25 | 10 | 102 | 26 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-25 | 10 | 102 | 26 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00379 | DAP | Transfer from AT3G24520 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.7G231100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020423775.1 | 0.0 | heat stress transcription factor C-1 | ||||
Swissprot | Q9LV52 | 2e-90 | HSFC1_ARATH; Heat stress transcription factor C-1 | ||||
TrEMBL | A0A251NFN3 | 0.0 | A0A251NFN3_PRUPE; Uncharacterized protein | ||||
STRING | EMJ03448 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8367 | 30 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 2e-91 | heat shock transcription factor C1 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.7G231100.1.p |
Entrez Gene | 18770028 |
Publications ? help Back to Top | |||
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