PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G229900.1.p
Common NamePRUPE_ppa006700mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 318aa    MW: 37009.3 Da    PI: 9.2483
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G229900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.7e-06832123
                        EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                        y+C   dC  sF+rk++L+rH+  H
  Prupe.7G229900.1.p  8 YVCLvdDCRSSFRRKDHLNRHLLQH 32
                        899999***************9887 PP
2zf-C2H2187.8e-063762123
                        EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                        +kCp  +C++ F ++ n++rH r  H
  Prupe.7G229900.1.p 37 FKCPieNCNRGFVSQGNMRRHVRElH 62
                        89*********************988 PP
3zf-C2H223.71.2e-077799123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+dCgk+F+  s L++H ++H
  Prupe.7G229900.1.p 77 HVCQDCGKVFKFASKLQKHENSH 99
                        79******************999 PP
4zf-C2H213.60.0002167191223
                         EET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                         kC+   C  +Fs+ksnL++H +  H
  Prupe.7G229900.1.p 167 KCSykGCLHTFSTKSNLHQHVKAvH 191
                         688889**************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-8534IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.6E-6534No hitNo description
PROSITE profilePS5015710.034837IPR007087Zinc finger, C2H2
SMARTSM003550.0071832IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801032IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.6E-63559IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.56E-73599No hitNo description
PROSITE profilePS5015712.7153767IPR007087Zinc finger, C2H2
SMARTSM003552.0E-43762IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803962IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.07477104IPR007087Zinc finger, C2H2
SMARTSM003550.0427799IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.3E-57899IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
SMARTSM003552.3107132IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280109132IPR007087Zinc finger, C2H2
SMARTSM0035543135156IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.38E-6147204No hitNo description
PROSITE profilePS5015711.593166196IPR007087Zinc finger, C2H2
SMARTSM003550.016166191IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-4167191IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280168191IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.3E-5192220IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.6197223IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280199223IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MDQYQRPYVC LVDDCRSSFR RKDHLNRHLL QHQGKLFKCP IENCNRGFVS QGNMRRHVRE  60
LHNEDDPLAN VGGQKQHVCQ DCGKVFKFAS KLQKHENSHV KLDSVEAFCS EPGCMKYFSN  120
QKCLKAHIQS CHQHITCEIC GTKKLKRNIE RHLCTHEGGR ASVERIKCSY KGCLHTFSTK  180
SNLHQHVKAV HLEHKPFVCS FSGCGVRFAY KHVRDKHEKT GRHVYAYVSI ILTHNSIPSF  240
VGFWDKHLSR QCHIMSSYVG HYCFELQGDF EEADEQFRSR PRGGRKRKYP TIEMLVRKRV  300
TPPDQLGQES EYHSWLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A2e-11122015183Aart
2i13_B2e-11122015183Aart
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1279287RPRGGRKRK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Both isoforms 1 and 2 transcripts are expressed in seedlings and both TFIIIA and TFIIIA-C are present at similar ratios in 10-day-old seedlings (at protein level). In correlation with the reorganization of 5S rDNA chromatin to a mature state, full-length isoform 1 protein TFIIIA with transcriptional activity accumulates and permits de novo transcription of 5S rRNA. Isoforms 1 and 2 transcripts accumulate in various tissues of the reproductive phase, including flowers and siliques, but only isoform 2 is present in mature seeds. In flowers, both TFIIIA and TFIIIA-C are present at similar ratios (at protein level). Very low amounts of TFIIIA are found in extracts from fresh siliques compared to TFIIIA-C. The amount of full-length TFIIIA protein progressively increases from fresh siliques to seeds concomitant with lower proportions of the shorter TFIIIA-C protein (at protein level) thus leading to 5S rRNA accumulation in the seed. {ECO:0000269|PubMed:22353599}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, flowers, siliques and seeds. {ECO:0000269|PubMed:22353599}.
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G229900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2535391e-106AC253539.1 Prunus persica cultivar Lovell clone JGIBIXB-13K15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007202035.10.0transcription factor IIIA
SwissprotQ84MZ41e-101TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A251NFM10.0A0A251NFM1_PRUPE; Uncharacterized protein
STRINGEMJ032350.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.11e-104transcription factor IIIA