PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

ERF

Protein Properties

Length: 263aa MW: 28536.4 Da PI: 4.6748

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.7G222700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.7	1.4e-18	63	113	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g Prupe.7G222700.1.p 63 PVYRGVRMRT-WGKWVSEIREPRK---KNRIWLGTFSTPEMAARAHDVAALCIKG 113 68***998.******854...59*********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.3E-12	63	113	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.44E-21	64	121	IPR016177	DNA-binding domain
PROSITE profile	PS51032	23.077	64	121	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.3E-31	64	121	IPR001471	AP2/ERF domain
SMART	SM00380	9.0E-36	64	127	IPR001471	AP2/ERF domain
CDD	cd00018	9.96E-31	65	121	No hit	No description
PRINTS	PR00367	4.4E-10	65	76	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.4E-10	87	103	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MADPTNSETE SSFNSPSSPS PSSSGFSQSL PNSAQNPLPG SSDSPDPDQK RVKRARETSS 60 KHPVYRGVRM RTWGKWVSEI REPRKKNRIW LGTFSTPEMA ARAHDVAALC IKGNSAILNF 120 PGLAGSLPRP ESNSPRDIQT AAAKAASMEI TLNAPPPPSQ SSSPALSHST TSGDAGTPEE 180 LSEIVELPSL GTSYESAESG NEFVFVDSVE GWLYPPPWWH NSYFEEEYGY NSIINNIRDD 240 QMLMPEPPAA AECFADALLW QH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	5e-19	55	121	5	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.7G222700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU732463	1e-119	GU732463.1 Malus x domestica AP2 domain class transcription factor (AP2D39) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020423303.1	1e-159	ethylene-responsive transcription factor TINY
Swissprot	Q9LYD3	1e-66	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	M5W330	0.0	M5W330_PRUPE; Uncharacterized protein
STRING	EMJ03663	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF192	34	263

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	4e-67	ERF family protein

Link Out ? help Back to Top
Phytozome	Prupe.7G222700.1.p
Entrez Gene	18771268

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]