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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.7G216000.2.p | ||||||||
Common Name | PRUPE_ppa026975mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB | ||||||||
Protein Properties | Length: 250aa MW: 27551.6 Da PI: 6.889 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.8e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd l+++ + +G+g +W + + + g++R++k+c++rw++yl Prupe.7G216000.2.p 14 RGPWSPEEDTTLKNYLHNHGTGgNWISLPTKAGLNRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 41.1 | 4.1e-13 | 68 | 111 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +T+eEd l+ + G++ W+ Ia+ ++ gRt++++k++w++ Prupe.7G216000.2.p 68 RGGFTEEEDNLICTLYGTIGSR-WSVIASQLP-GRTDNDVKNYWNT 111 788*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.208 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.07E-27 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-10 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.79E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 19.981 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-12 | 68 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-23 | 70 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.51E-10 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MGRAPCCDKS KVKRGPWSPE EDTTLKNYLH NHGTGGNWIS LPTKAGLNRC GKSCRLRWLN 60 YLRPDIKRGG FTEEEDNLIC TLYGTIGSRW SVIASQLPGR TDNDVKNYWN TKLKKKFFAA 120 YNMNLASREF PASVPKFESG TPQDHGTSSS CFDGTLPYLM DVSLGQSFDQ QKQISQFSHS 180 NFLEVNDFGT CGSKSFTNIS SSQEASSLPT SSILGLENNY TLWSGDESGA LTDYGFEPPA 240 DALLGNFGY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.7G216000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007204437.1 | 0.0 | transcription factor MYB6 | ||||
TrEMBL | M5VX13 | 0.0 | M5VX13_PRUPE; Uncharacterized protein | ||||
STRING | EMJ05636 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65790.1 | 4e-71 | myb domain protein 68 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.7G216000.2.p |
Entrez Gene | 18769043 |