PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.7G194200.1.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

ARF

Protein Properties

Length: 1169aa MW: 130674 Da PI: 6.755

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.7G194200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.8	1.7e-22	126	227	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++p++ ae++ + +++ ++l+ +d++ W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F Prupe.7G194200.1.p 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELMAKDLHDSAWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI- 213 99***************************954.5444.48**********************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 ++++ +l+++++r+ Prupe.7G194200.1.p 214 -RDEKSQLLLGIRRA 227 .45677789999997 PP
2	Auxin_resp	122.3	3.5e-40	252	334	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F++++nPras+seFvv+++k++ka++++vs+GmRf+m+fete+s rr++Gt++g+sd+d+vrW+nS+Wr+L+ Prupe.7G194200.1.p 252 AAHAAANNSPFTIFFNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDMDTVRWKNSQWRNLQ 334 79*******************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.44E-43	116	255	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.8E-41	118	240	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.84E-18	125	226	No hit	No description
Pfam	PF02362	1.3E-20	126	227	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.097	126	228	IPR003340	B3 DNA binding domain
SMART	SM01019	6.1E-22	126	228	IPR003340	B3 DNA binding domain
Pfam	PF06507	2.9E-35	252	334	IPR010525	Auxin response factor
Pfam	PF02309	1.6E-8	1035	1124	IPR033389	AUX/IAA domain
PROSITE profile	PS51745	25.092	1038	1131	IPR000270	PB1 domain
SuperFamily	SSF54277	3.38E-8	1051	1116	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009723	Biological Process	response to ethylene
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0010311	Biological Process	lateral root formation
GO:0048366	Biological Process	leaf development
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1169 aa Download sequence Send to blast
MKAPSNGFLA TSGEGEQKRI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE 60 TDFIPNYPNL PSKLICMLHN VTLHADTETD EVYAQMTLQP VNKYEKEAIL ASDMGLKQSR 120 QPSEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELMAKD LHDSAWTFRH 180 IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVMS 240 SDSMHIGILA AAAHAAANNS PFTIFFNPRA SPSEFVVPLA KYNKAMYTQV SLGMRFRMMF 300 ETEESGVRRY MGTITGISDM DTVRWKNSQW RNLQVGWDES TAGERPSRVS IWEIEPVVTP 360 FYICPPPFFR PKFPKQPGMP DDESDIENAF KRAMPWLGDD FGMKSAPNSI FPGLSLVQWM 420 NMQQNNQFSA AQSGYFPSMV PPTGLQNNLS TDDPSKLLSF QAPVLSAPGV QLNKSAPQNQ 480 VSQVQQPTVT WPQQQQQQQQ QLQQLLHSPM NQQQQSHPQQ QQLQQLLHSP MNQQQQNHAQ 540 QQQLQQLLQT PTSQQLQNYS HQQREQQQPQ ESQQLQQQQQ LHQQQPQHQP QQQQQRQQQQ 600 QQQLQPTVVN NGVVAPNQIP GQNSHQPVMF SQLQQQQLQT GNTQSQQTVH SSSKNSFQFT 660 TGSQDSQLQQ QQLEPQPSLL QRQQQSAQLQ QSSLQLLHSS MSQKVQQQPQ VQQSSQQGIS 720 EQQLQLQLLQ KLQQQQQQQQ QQLLSPSSPL LQPQLLQQQL AHQQNQQLQQ LPVSQHHQQQ 780 LSGNSFSADK LLNNNFSAPS LMQSQHISSV QPQSQHKPLT AIRSHSGLTE GDGPSCSTSP 840 STNNCQMSPS NFLNRNQQGT AMLLGDSVAE PASNLVQELQ SKSDIRIKHE FPSSKGPDQI 900 KYKGTITDQL EASSSGTSYC LDASTIQQNY ALPTFCLDSD VQSHPRNSLP FSANIEGLAP 960 DTLLSRGYDS QKDLQNLLSN YGGTPRDIET ELSTAAISSQ SFGAANLPFK PGCSSDVAIN 1020 EAGVLSNGLW ANQAQRMRTY TKVQKRGSVG RCIDVTRYKG YDELRHDLAR MFGIEGQLED 1080 PHRTDWKLVY VDHENDILLV GDDPWEEFVG CVQSIKILSS VEVQQMSLDG DLGNVPVPNQ 1140 ACSGSDSGNA WRAPYDDNSA ASFNRNQK*

Sequence ? help Back to Top

Protein Sequence Length: 1169 aa Download sequence Send to blast

MKAPSNGFLA TSGEGEQKRI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
TDFIPNYPNL PSKLICMLHN VTLHADTETD EVYAQMTLQP VNKYEKEAIL ASDMGLKQSR  120
QPSEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELMAKD LHDSAWTFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVMS  240
SDSMHIGILA AAAHAAANNS PFTIFFNPRA SPSEFVVPLA KYNKAMYTQV SLGMRFRMMF  300
ETEESGVRRY MGTITGISDM DTVRWKNSQW RNLQVGWDES TAGERPSRVS IWEIEPVVTP  360
FYICPPPFFR PKFPKQPGMP DDESDIENAF KRAMPWLGDD FGMKSAPNSI FPGLSLVQWM  420
NMQQNNQFSA AQSGYFPSMV PPTGLQNNLS TDDPSKLLSF QAPVLSAPGV QLNKSAPQNQ  480
VSQVQQPTVT WPQQQQQQQQ QLQQLLHSPM NQQQQSHPQQ QQLQQLLHSP MNQQQQNHAQ  540
QQQLQQLLQT PTSQQLQNYS HQQREQQQPQ ESQQLQQQQQ LHQQQPQHQP QQQQQRQQQQ  600
QQQLQPTVVN NGVVAPNQIP GQNSHQPVMF SQLQQQQLQT GNTQSQQTVH SSSKNSFQFT  660
TGSQDSQLQQ QQLEPQPSLL QRQQQSAQLQ QSSLQLLHSS MSQKVQQQPQ VQQSSQQGIS  720
EQQLQLQLLQ KLQQQQQQQQ QQLLSPSSPL LQPQLLQQQL AHQQNQQLQQ LPVSQHHQQQ  780
LSGNSFSADK LLNNNFSAPS LMQSQHISSV QPQSQHKPLT AIRSHSGLTE GDGPSCSTSP  840
STNNCQMSPS NFLNRNQQGT AMLLGDSVAE PASNLVQELQ SKSDIRIKHE FPSSKGPDQI  900
KYKGTITDQL EASSSGTSYC LDASTIQQNY ALPTFCLDSD VQSHPRNSLP FSANIEGLAP  960
DTLLSRGYDS QKDLQNLLSN YGGTPRDIET ELSTAAISSQ SFGAANLPFK PGCSSDVAIN  1020
EAGVLSNGLW ANQAQRMRTY TKVQKRGSVG RCIDVTRYKG YDELRHDLAR MFGIEGQLED  1080
PHRTDWKLVY VDHENDILLV GDDPWEEFVG CVQSIKILSS VEVQQMSLDG DLGNVPVPNQ  1140
ACSGSDSGNA WRAPYDDNSA ASFNRNQK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldu_A	1e-170	20	355	51	388	Auxin response factor 5
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppe.14518	6e-82	fruit

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29. Functionally redundant with ARF7. {ECO:0000269\|PubMed:12036261, ECO:0000269\|PubMed:16461383, ECO:0000269\|PubMed:17259263}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.7G194200.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and ethylene. {ECO:0000269\|PubMed:16461383}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020423283.1	0.0	auxin response factor 7 isoform X1
Swissprot	Q8RYC8	0.0	ARFS_ARATH; Auxin response factor 19
TrEMBL	A0A251NDW3	0.0	A0A251NDW3_PRUPE; Auxin response factor
STRING	XP_008242274.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4918	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	auxin response factor 19

Link Out ? help Back to Top
Phytozome	Prupe.7G194200.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Perilli S, et al. RETINOBLASTOMA-RELATED protein stimulates cell differentiation in the Arabidopsis root meristem by interacting with cytokinin signaling. Plant Cell, 2013. 25(11): p. 4469-78 [PMID:24285791] Sun Y, et al. Manipulation of Auxin Response Factor 19 affects seed size in the woody perennial Jatropha curcas. Sci Rep, 2017. 7: p. 40844 [PMID:28102350] Wójcikowska B,Gaj MD Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis. Plant Cell Rep., 2017. 36(6): p. 843-858 [PMID:28255787] Olmo R, et al. Molecular Transducers from Roots Are Triggered in Arabidopsis Leaves by Root-Knot Nematodes for Successful Feeding Site Formation: A Conserved Post-Embryogenic De novo Organogenesis Program? Front Plant Sci, 2017. 8: p. 875 [PMID:28603536] Lee K,Seo PJ High-temperature promotion of callus formation requires the BIN2-ARF-LBD axis in Arabidopsis. Planta, 2017. 246(4): p. 797-802 [PMID:28766014] Ayala-Rodríguez JÁ,Barrera-Ortiz S,Ruiz-Herrera LF,López-Bucio J Folic acid orchestrates root development linking cell elongation with auxin response and acts independently of the TARGET OF RAPAMYCIN signaling in Arabidopsis thaliana. Plant Sci., 2017. 264: p. 168-178 [PMID:28969797] Nakamura M, et al. Auxin and ROP GTPase Signaling of Polar Nuclear Migration in Root Epidermal Hair Cells. Plant Physiol., 2018. 176(1): p. 378-391 [PMID:29084900] Hong L, et al. Alternative polyadenylation is involved in auxin-based plant growth and development. Plant J., 2018. 93(2): p. 246-258 [PMID:29155478] Lee K,Park OS,Seo PJ Arabidopsis ATXR2 deposits H3K36me3 at the promoters of LBD genes to facilitate cellular dedifferentiation. Sci Signal, 2018. [PMID:29184030] Kimura T, et al. Asymmetric Auxin Distribution is Not Required to Establish Root Phototropism in Arabidopsis. Plant Cell Physiol., 2018. 59(4): p. 823-835 [PMID:29401292] Schoenaers S, et al. The Auxin-Regulated CrRLK1L Kinase ERULUS Controls Cell Wall Composition during Root Hair Tip Growth. Curr. Biol., 2018. 28(5): p. 722-732.e6 [PMID:29478854] Huang KL, et al. The ARF7 and ARF19 Transcription Factors Positively Regulate PHOSPHATE STARVATION RESPONSE1 in Arabidopsis Roots. Plant Physiol., 2018. 178(1): p. 413-427 [PMID:30026290]