PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.7G165700.1.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

DBB

Protein Properties

Length: 185aa MW: 20377.1 Da PI: 6.5825

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.7G165700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.5	1.2e-07	4	33	5	34
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++ fC ++ lC+ C ++ H Prupe.7G165700.1.p 4 LCDSCESAAAIVFCAADEAALCPACDEKVH 33 7**************************998 PP
2	zf-B_box	27.8	5.4e-09	52	91	2	37
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 e ++C+ +e+ ++ ++Ce +++ lC +C + H g H Prupe.7G165700.1.p 52 EVPRCDICENAPAFFYCEIDGSSLCLQCDMVVHVGgkrtH 91 789***************************9996545555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.125	1	47	IPR000315	B-box-type zinc finger
SMART	SM00336	5.2E-7	1	47	IPR000315	B-box-type zinc finger
Pfam	PF00643	6.5E-6	3	42	IPR000315	B-box-type zinc finger
CDD	cd00021	1.30E-5	3	45	No hit	No description
SuperFamily	SSF57845	8.24E-5	48	87	No hit	No description
PROSITE profile	PS50119	8.916	51	96	IPR000315	B-box-type zinc finger
SMART	SM00336	7.5E-12	51	96	IPR000315	B-box-type zinc finger
Pfam	PF00643	5.1E-7	52	91	IPR000315	B-box-type zinc finger
CDD	cd00021	3.95E-7	54	84	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MRTLCDSCES AAAIVFCAAD EAALCPACDE KVHMCNKLAS RHVRVGLATP SEVPRCDICE 60 NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRYLVLRQR VEFPGDKPGN VDDPASQPID 120 LGETRRVQHQ PPRMTIGENQ QNHRASPIRI SDANADGHVK MDTKLIDLNM KPHRMHEQAS 180 NKED*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269\|PubMed:18540109}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.7G165700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007202703.2	1e-136	B-box zinc finger protein 19 isoform X1
Swissprot	C0SVM5	2e-74	BBX19_ARATH; B-box zinc finger protein 19
TrEMBL	A0A251NCH5	1e-134	A0A251NCH5_PRUPE; Uncharacterized protein
STRING	XP_008241795.1	1e-134	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2734	33	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38960.1	6e-77	DBB family protein

Link Out ? help Back to Top
Phytozome	Prupe.7G165700.1.p