PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

HD-ZIP

Protein Properties

Length: 215aa MW: 24771.8 Da PI: 6.9051

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.7G149700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.1	1.8e-19	59	112	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++t+eq++ Le F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ Prupe.7G149700.1.p 59 KRKLTAEQVNLLELNFGNEHKLESEKKDRLASELGLDPRQVAVWFQNRRARWKN 112 5689************************************************95 PP
2	HD-ZIP_I/II	119	2.5e-38	58	149	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkr+l++eqv+lLE +F +e+kLe+e+K +la+eLgl+prqvavWFqnrRAR+k+k+lE++y+ Lk+++d+ ++en++Le+e+++L+e+++ Prupe.7G149700.1.p 58 KKRKLTAEQVNLLELNFGNEHKLESEKKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKEHDSTVSENRKLESEMSKLKEQIS 148 9***************************************************************************************998 PP HD-ZIP_I/II 93 e 93 e Prupe.7G149700.1.p 149 E 149 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	2.1E-17	56	117	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.84E-18	57	122	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.293	58	113	IPR001356	Homeobox domain
CDD	cd00086	2.83E-15	58	114	No hit	No description
Pfam	PF00046	1.1E-16	59	112	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.4E-20	60	120	IPR009057	Homeodomain-like
PRINTS	PR00031	1.8E-5	84	93	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	88	111	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.8E-5	93	109	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MTTKTNHQVV EEDDHMLLIS HLYPSDVYTQ IVPQQGASKP KRRRKKSKSG EAGGAGLKKR 60 KLTAEQVNLL ELNFGNEHKL ESEKKDRLAS ELGLDPRQVA VWFQNRRARW KNKKLEEEYS 120 NLKKEHDSTV SENRKLESEM SKLKEQISEA EKEIRRLSER VDHGGSSNSP SSSLSMDAID 180 PPFLGEFGVE EYDDVFYMPQ NNYIHGMEWM NLYM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	41	59	RRRKKSKSGEAGGAGLKKR
2	43	60	RKKSKSGEAGGAGLKKRK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00473	DAP	Transfer from AT4G36740	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.7G149700.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007204731.1	1e-158	homeobox-leucine zipper protein ATHB-40
Swissprot	O23208	2e-76	ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBL	M5WGL9	1e-157	M5WGL9_PRUPE; Uncharacterized protein
STRING	EMJ05930	1e-158	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4789	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	3e-66	homeobox protein 40

Link Out ? help Back to Top
Phytozome	Prupe.7G149700.1.p
Entrez Gene	18769821

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]