PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G134800.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 498aa    MW: 55688.1 Da    PI: 7.0762
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G134800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.33.4e-19138228199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f+k l++s+v +  ++ lp  f+++h  +  +++t+tlede gr+ ++k+i  k++    l++GW++F+ +++L egD++vF+l++ ++f 
  Prupe.7G134800.1.p 138 FVKSLVRSHVASCFWMGLPSLFCKSHLPD--KDITMTLEDEGGRQCQLKYIAYKTG----LSAGWRQFAASHNLIEGDVLVFQLVEPTKF- 221
                         89************************644..678****************666665....9**********************9876666. PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                          +v ++r+
  Prupe.7G134800.1.p 222 -KVYIIRS 228
                         .9998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.5E-21130229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-23131229IPR015300DNA-binding pseudobarrel domain
CDDcd100178.13E-28136227No hitNo description
PROSITE profilePS5086312.703138229IPR003340B3 DNA binding domain
PfamPF023622.5E-16138228IPR003340B3 DNA binding domain
SMARTSM010196.3E-22138229IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MGRNVGKKET QLHQGREEKP PQTPSSKEEG HPTPAQLSKP RPRPKPNTNP KPSLLNPAKP  60
KKPNKPNEKE VEHSMPMKEL SNIQIKNMLG QAGKSPALSN TQYEYPVDGS PSRGQAKSSA  120
VIQAQEVRSK LEPRFPSFVK SLVRSHVASC FWMGLPSLFC KSHLPDKDIT MTLEDEGGRQ  180
CQLKYIAYKT GLSAGWRQFA ASHNLIEGDV LVFQLVEPTK FKVYIIRSND LTEVDGGLGL  240
LNLDSHTKRK DADKDNAETG TEACNDATRK RAHSPPSEAQ KKKKIGLQPV EQSEDDSEEV  300
DSEVLEESKS PDTALQFEDI QSFENFSILV NGLLVESELP EDVRRKYYKL CCSQNAFLHE  360
NFVEGMNHKL VVGAISETVN IADAIRACKL TTTRDDFVSW DKYLKAFELL GMNVGFLRDR  420
LCRLANLSND SGAAVEARMY KEAKIERSQA GIGIRNIEVK LEELRDMCDE FGAAIESLRS  480
KAEVYTRKFH EEVTAPW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268283RKRAHSPPSEAQKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G134800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007202224.20.0B3 domain-containing protein Os01g0234100
TrEMBLA0A251ND490.0A0A251ND49_PRUPE; Uncharacterized protein
STRINGXP_008241504.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.17e-38B3 family protein