PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.7G131400.6.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 421aa MW: 45688.2 Da PI: 5.0124 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.8 | 3e-06 | 164 | 186 | 33 | 55 |
.TTS-STCHHHHHHHHHHHHHHH CS HLH 33 apskKlsKaeiLekAveYIksLq 55 + s+K +Ka++L +A+eY+k+Lq Prupe.7G131400.6.p 164 NMSEKTDKASMLDEAIEYLKQLQ 186 5689******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-7 | 163 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.16E-7 | 164 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.77E-5 | 166 | 190 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010114 | Biological Process | response to red light | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MGDTYDHYYK NATCSSSPSA SVSPAAAAAP SQPPSTSDEI SLFLQQILLR SSSSLASVVA 60 HTGKAPQFLF SSSPSVAALP DHLSRPCHSM FLGDGITAVD SSAALLPAGN PNVSSSSFGA 120 SENETDEYDC ESEEGLEALV EEAAGKPGCG RSSSKRSRAA EVHNMSEKTD KASMLDEAIE 180 YLKQLQLQVQ MLSMRNGMSL HPMCLPGALQ PVQVSQMRMD LGEENRPLHL DMTGTLLMNQ 240 ESPTQNLFHF SNQCTDANQS YVPDMSNVVN SETSFGLESS MRAHLGPFQL PNSSEEICRE 300 DMLQHQQINV NHSETNPLEF ELGATARVSL SFNTQVSDLK GSSSLGACIT GRNRQEGLLL 360 KAMKQNFHID SMRTGRRRVA NDNIKTERRH IWCMLSSATL NILDLVQPQL VTAFVILQID 420 * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.1152 | 0.0 | fruit |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00035 | PBM | Transfer from AT4G36930 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.7G131400.6.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU181270 | 0.0 | GU181270.1 Prunus persica ALCATRAZ/SPATULA-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008241478.1 | 0.0 | PREDICTED: transcription factor SPATULA isoform X1 | ||||
TrEMBL | A0A251NAX2 | 0.0 | A0A251NAX2_PRUPE; Uncharacterized protein | ||||
STRING | XP_008241478.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36930.1 | 2e-36 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.7G131400.6.p |