PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.7G131400.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 400aa MW: 43850.3 Da PI: 8.1009 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 51.1 | 2.4e-16 | 224 | 270 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ E+rRR+riN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq Prupe.7G131400.4.p 224 VHNMSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 270 6*************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.26E-20 | 217 | 281 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-20 | 217 | 280 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.873 | 220 | 269 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.11E-16 | 223 | 274 | No hit | No description |
Pfam | PF00010 | 1.0E-13 | 224 | 270 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.5E-18 | 226 | 275 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010114 | Biological Process | response to red light | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MQTSPLCHTP RRNKSSNSKL KAKANTPTLS LSLSLSFSLS HIPKTSKQHQ NQKQRRKRNQ 60 RVMGDTYDHY YKNATCSSSP SASVSPAAAA APSQPPSTSD EISLFLQQIL LRSSSSLASV 120 VAHTGKAPQF LFSSSPSVAA LPDHLSRPCH SMFLGDGITA VDSSAALLPA GNPNVSSSSF 180 GASENETDEY DCESEEGLEA LVEEAAGKPG CGRSSSKRSR AAEVHNMSEK RRRSRINEKM 240 KALQNLIPNS NKTDKASMLD EAIEYLKQLQ LQVQMLSMRN GMSLHPMCLP GALQPVQVSQ 300 MRMDLGEENR PLHLDMTGTL LMNQESPTQN LFHFSNQCTD ANQSYVPDMS NVVNSETSFG 360 LESSMRAHLG PFQLPNSSEN LNWERPLEFH FPLTHKYLI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.1152 | 0.0 | fruit |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00035 | PBM | Transfer from AT4G36930 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.7G131400.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU181270 | 0.0 | GU181270.1 Prunus persica ALCATRAZ/SPATULA-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007204562.2 | 0.0 | transcription factor SPATULA isoform X2 | ||||
TrEMBL | A0A251NCY4 | 0.0 | A0A251NCY4_PRUPE; Uncharacterized protein | ||||
STRING | EMJ05761 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36930.1 | 4e-50 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.7G131400.4.p |