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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.7G125800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | C2H2 | ||||||||
Protein Properties | Length: 284aa MW: 30797.4 Da PI: 8.873 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.00068 | 103 | 125 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++Fs+ L H +H Prupe.7G125800.1.p 103 YQCKTCDRCFSSFQALGGHRASH 125 9***********99999998887 PP | |||||||
2 | zf-C2H2 | 12.7 | 0.00038 | 190 | 212 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F++ L H+r+H Prupe.7G125800.1.p 190 HECSVCGAEFTSGQALGGHMRRH 212 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.97E-9 | 102 | 125 | No hit | No description |
Pfam | PF13912 | 7.5E-10 | 102 | 127 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.11 | 103 | 125 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.972 | 103 | 130 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 105 | 125 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.97E-9 | 185 | 212 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.2E-4 | 188 | 212 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 9.7E-13 | 189 | 213 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.012 | 190 | 212 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.743 | 190 | 212 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 192 | 212 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MMIIKGKRTK RQRLASPLAH ASTATASSSS SAGHDHQHQV LVGPTETSPA TSADQFTEIS 60 TEEEEDMANC LILLAQGNST PKTQHPILVH NNKASASAGL YVYQCKTCDR CFSSFQALGG 120 HRASHKKPNK ANMNITQDNK KALSFVEEAE EYDRFNNTST TLSLQISNRD YRASSSAATP 180 VNNSKANKVH ECSVCGAEFT SGQALGGHMR RHRTFMNTTT TATAAAMSSP QPQSGSKRPR 240 SILQLDLNLP APEEERLETK FPFGPKKEQV IVFSTSPLVG CHY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.7G125800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020423318.1 | 0.0 | zinc finger protein ZAT5 | ||||
TrEMBL | A0A251NAP4 | 0.0 | A0A251NAP4_PRUPE; Uncharacterized protein | ||||
STRING | XP_008241377.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 2e-55 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.7G125800.1.p |