PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

HD-ZIP

Protein Properties

Length: 194aa MW: 22247.1 Da PI: 8.6345

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.7G121100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.7	2.3e-19	34	87	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ +++++ql+ Le+ F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k Prupe.7G121100.1.p 34 KKKRLSTDQLDSLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWK 87 56679************************************************9 PP
2	HD-ZIP_I/II	119.7	1.5e-38	34	123	2	91
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kk+rls++q+ +LE+sF+ee kL+p+rK++l+reLglqprq+avWFqnrRAR+k+kqlE+ y+aLk++yd +++e+++L++ev +L++ l Prupe.7G121100.1.p 34 KKKRLSTDQLDSLERSFQEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLERLYDALKQEYDVVSKEKQKLQEEVMKLKTIL 123 9*************************************************************************************9766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.21E-19	21	91	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.022	29	89	IPR001356	Homeobox domain
SMART	SM00389	2.0E-16	32	93	IPR001356	Homeobox domain
Pfam	PF00046	1.7E-16	34	87	IPR001356	Homeobox domain
CDD	cd00086	3.30E-15	34	90	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.5E-20	36	96	IPR009057	Homeodomain-like
PRINTS	PR00031	3.1E-5	60	69	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	64	87	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.1E-5	69	85	IPR000047	Helix-turn-helix motif
Pfam	PF02183	6.5E-8	89	123	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0010434	Biological Process	bract formation
GO:0010582	Biological Process	floral meristem determinacy
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MEMKHQAMMS ESSQGLVPGL DRNHSSYGCS NQDKKKRLST DQLDSLERSF QEEIKLDPDR 60 KMKLSRELGL QPRQIAVWFQ NRRARWKAKQ LERLYDALKQ EYDVVSKEKQ KLQEEVMKLK 120 TILRDEVARK QVSTGYTEIS GEETVESTSV AIRSSNKGGG TSQHQVAECN YLFNVEEYNP 180 VSPPFWGALP SYP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	89	RRARWKAKQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Widely expressed. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00486	DAP	Transfer from AT5G03790	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.7G121100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007202889.2	1e-143	putative homeobox-leucine zipper protein ATHB-51
Swissprot	Q9LZR0	2e-54	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A251NAH2	1e-142	A0A251NAH2_PRUPE; Uncharacterized protein
STRING	XP_008241330.1	1e-136	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3394	34	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	7e-57	homeobox 51

Link Out ? help Back to Top
Phytozome	Prupe.7G121100.1.p
Entrez Gene	18769447

Publications ? help Back to Top
Zhao JL, et al. Micro-trichome as a class I homeodomain-leucine zipper gene regulates multicellular trichome development in Cucumis sativus. J Integr Plant Biol, 2015. 57(11): p. 925-35 [PMID:25735194] Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]