PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G117200.5.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HSF
Protein Properties Length: 536aa    MW: 59567.9 Da    PI: 4.7316
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G117200.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.28.2e-361051962102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k++++++d++l+++isw + gnsfvv+d+ ef++ vLp+ Fkh+nf+SFvRQLn+YgF+kv++++         weF+++ Fk+gk++
  Prupe.7G117200.5.p 105 FLSKTFDLVDDPSLDSIISWGSGGNSFVVWDPLEFSRLVLPRNFKHNNFSSFVRQLNTYGFRKVDTDK---------WEFANEAFKRGKRH 186
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll+ki+r+ks
  Prupe.7G117200.5.p 187 LLKKIQRRKS 196
                         ********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.7E-57101194IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.19E-35101194IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.1E-37102194IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.0E-17105128IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.4E-31105194IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-17143155IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340144168IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-17156168IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MNPKDECYPK SPPTSAELDP ENPLRPEMSE PLLGSQSIPS FTSPLMEFEA FCALNPSESS  60
WSSGAFEFDE KAPTATYSSM DAGGAEHVAV PQPLECLQDS PVPPFLSKTF DLVDDPSLDS  120
IISWGSGGNS FVVWDPLEFS RLVLPRNFKH NNFSSFVRQL NTYGFRKVDT DKWEFANEAF  180
KRGKRHLLKK IQRRKSPQSL QVGPSAEAGR PGLEGDIETL RKERSMLMQE VDDLQQQQRG  240
TVHHMKVVNE RLQYAEQRQK QMVSFLSKLL QNPAFLARLQ QKTGQKGIDS PRMKRKFVKQ  300
HQHELGKSDS CIQGQIVKYQ PAWRNLSAVP DVNPVVPIEQ SPDNLSQVMA GKLGLVTESK  360
PYQFVDVASD ELNLSAEPTV TLGFIKTPEQ EGEGASSMGA KDPFQKGKSV LSPQQELNPE  420
YYVSFQEDFG KNKMFPELFS PGIDGMIKQE DIWSMGFDVS AGMSSSSNEL WSNPVNYDVP  480
EIGVTSELLD IWDIGPLHAA GGSGIDKWPA DESAFDEPDS QAGQLKVDTS KRIDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-2410019915125Heat shock factor protein 1
5d5u_B7e-2410019424129Heat shock factor protein 1
5d5v_B7e-2410019424129Heat shock factor protein 1
5d5v_D7e-2410019424129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187193LKKIQRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G117200.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007202868.20.0heat stress transcription factor A-3 isoform X1
TrEMBLA0A251NAB70.0A0A251NAB7_PRUPE; Uncharacterized protein
STRINGXP_008241431.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-96heat shock transcription factor A3