PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

ERF

Protein Properties

Length: 202aa MW: 22481.2 Da PI: 4.6906

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.7G115900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	44.7	3.3e-14	44	93	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 ykGVr+ + g+Wv+e+r p k+ r++lg+f +++Aa+a++ a+++l+g Prupe.7G115900.1.p 44 IYKGVRQ--RCGKWVCELRQP---DqKKSRIWLGTFTCPDMAARAYDVAALALKG 93 69*86..47**9998...3357**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.5E-9	43	93	IPR001471	AP2/ERF domain
CDD	cd00018	7.98E-26	43	102	No hit	No description
PROSITE profile	PS51032	19.44	44	101	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.8E-26	44	103	IPR001471	AP2/ERF domain
SMART	SM00380	1.5E-27	44	107	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.62E-17	44	103	IPR016177	DNA-binding domain
PRINTS	PR00367	1.0E-6	45	56	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.0E-6	83	103	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MTDFTDDASS SSSNRVSAQA HLQSVEFKKR KAGRKKFNET RHPIYKGVRQ RCGKWVCELR 60 QPDQKKSRIW LGTFTCPDMA ARAYDVAALA LKGKSAALNF PHEASTLPRI ASTCSVKDLQ 120 CAAAEAAEGF FEVEVKSSGL EEKEEEEVVY LDEEELFNMP GLIDSLAEGL ILTPPAMQKG 180 FNWNDFDDDM ENAVDFSLWS D*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	4e-15	42	103	12	74	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in developing seeds and apices. {ECO:0000269\|PubMed:17136305}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269\|PubMed:17136305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.7G115900.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269\|PubMed:17136305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007204774.1	1e-149	dehydration-responsive element-binding protein 1F
Swissprot	A2WZI4	3e-49	DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
Swissprot	Q8S9Z5	3e-49	DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBL	M5W9P6	1e-148	M5W9P6_PRUPE; Uncharacterized protein
STRING	EMJ05973	1e-149	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF243	33	224

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25480.1	6e-26	dehydration response element B1A

Link Out ? help Back to Top
Phytozome	Prupe.7G115900.1.p
Entrez Gene	18771464

Publications ? help Back to Top
Wang Q, et al. Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice. Plant Mol. Biol., 2008. 67(6): p. 589-602 [PMID:18470484] Liu HH,Wang YG,Wang SP,Li HJ Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses. Genet. Mol. Res., 2015. 14(1): p. 2331-40 [PMID:25867379]