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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Prupe.7G115500.1.p |
| Common Name | PRUPE_ppa006912mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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| Family |
GRF |
| Protein Properties |
Length: 391aa MW: 42539.2 Da PI: 8.7975 |
| Description |
GRF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Prupe.7G115500.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRC | 79.1 | 4.1e-25 | 148 | 192 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45
d+ep rCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e+
Prupe.7G115500.1.p 148 DPEPTRCRRTDGKKWRCSRDVVAGQKYCERHVHRGRNRSRKPVEA 192
79****************************************986 PP
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| 2 | QLQ | 50.3 | 7e-18 | 76 | 112 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
s+F+ +Qlq+L+ Q+l+++y++a++ vPpeLlq+i+k
Prupe.7G115500.1.p 76 SYFSFSQLQELELQALIFRYMLAGAAVPPELLQPIRK 112
79*********************************86 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0006995 | Biological Process | cellular response to nitrogen starvation |
| GO:0008285 | Biological Process | negative regulation of cell proliferation |
| GO:0009624 | Biological Process | response to nematode |
| GO:0009631 | Biological Process | cold acclimation |
| GO:0016036 | Biological Process | cellular response to phosphate starvation |
| GO:0048364 | Biological Process | root development |
| GO:0048366 | Biological Process | leaf development |
| GO:0050826 | Biological Process | response to freezing |
| GO:0051365 | Biological Process | cellular response to potassium ion starvation |
| GO:0061062 | Biological Process | regulation of nematode larval development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005737 | Cellular Component | cytoplasm |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 391 aa
Download sequence Send
to blast |
MDFHLKQWRN QQHESEEQHS AKIPKLHLEP HPHSEPSGYA LPLFVPEPNS KMISTLSAFS 60
ESTPASASTR FPKMGSYFSF SQLQELELQA LIFRYMLAGA AVPPELLQPI RKSLLHSPPY 120
FLHHPLQQYP HFQPALLQSG YWGRAAMDPE PTRCRRTDGK KWRCSRDVVA GQKYCERHVH 180
RGRNRSRKPV EATTAAAGGG GGGTSDIATN TTTKTSSSGA HFTLSGSSSS PSIDLLHLNQ 240
SSSEPKAENR SLFEPHSEVS GSAKSDSHVL RPFFDDWPGK LQELDNARTN AGSMNSATSL 300
SISIRGNSSS DVSLKLSTGN GVETGRLDGH AEREQPQLNW PAGWGTNQMA SMGGPLAEAL 360
RSSSNSNSSP TSVLHQLPRS SASETSFIST *
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269|PubMed:20023165}. |
| Uniprot | TISSUE SPECIFICITY: Strongly expressed in actively growing and developing tissues, such as roots, upper stems, and shoot tips containing the shoot apical meristem (SAM) and flower buds. Also expressed in mature flowers, but weakly expressed in mature stems and leaves. {ECO:0000269|PubMed:12974814}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:22419826}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}. |
| Publications
? help Back to Top |
- Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P
Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves.
Plant Cell, 2013. 25(9): p. 3570-83
[PMID:24076976] - Vercruyssen L, et al.
ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
Plant Cell, 2014. 26(1): p. 210-29
[PMID:24443518] - Liu J,Rice JH,Chen N,Baum TJ,Hewezi T
Synchronization of developmental processes and defense signaling by growth regulating transcription factors.
PLoS ONE, 2014. 9(5): p. e98477
[PMID:24875638] - Cao Y,Han Y,Jin Q,Lin Y,Cai Y
Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
Front Plant Sci, 2016. 7: p. 1750
[PMID:27933074]
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