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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Prupe.7G100600.1.p |
| Common Name | PRUPE_ppa019539mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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| Family |
B3 |
| Protein Properties |
Length: 374aa MW: 41660.2 Da PI: 6.7234 |
| Description |
B3 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Prupe.7G100600.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 106.6 | 1.3e-33 | 108 | 209 | 1 | 100 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
f+k ltpsdv+k++rlv+pk++ae++ gg+ ++ l++edesg+sW+++++y+++s++yvltkGW+++vk+++L++gD+v+F++ ++
Prupe.7G100600.1.p 108 FEKPLTPSDVGKLNRLVIPKQHAEKYfplgGGD--SGLLLSFEDESGKSWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVVLFERRRS 196
99***************************7666..6679************************************************8877 PP
SEE..EEEEE-SS CS
B3 88 sefelvvkvfrks 100
++ +l+++++r+s
Prupe.7G100600.1.p 197 HTDRLFIGWRRRS 209
9999******985 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 374 aa
Download sequence Send
to blast |
MSINHFSSDH PETQWWPNTA HQQQQDPSRP HFLPQFYQDT HHHNYQAWLN SQEQPTPMSP 60
TPPTPTTLNF NLNQNDAESD HANQLQHHLL LQSSPPLDDH DEENEPMFEK PLTPSDVGKL 120
NRLVIPKQHA EKYFPLGGGD SGLLLSFEDE SGKSWRFRYS YWNSSQSYVL TKGWSRYVKE 180
KRLDAGDVVL FERRRSHTDR LFIGWRRRSA AATPSAHDSG PGATQVNGGA GESSGSGSAG 240
GWTRMFYSAP HHNSSDGGSS YPAHQYHNHS AAPYPPDCLH AAGSGVQNMS QTTSSVGSSK 300
ILRLFGVNLE CQQQADHESE PSTPDGSSSL SMSSSQGPTP HHHLYPRAAY DYAADQRDFS 360
FSRDGNPMRN RRG*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5os9_A | 1e-46 | 103 | 208 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
| 5os9_B | 1e-46 | 103 | 208 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015041 | 3e-59 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
