PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

NAC

Protein Properties

Length: 235aa MW: 27146.1 Da PI: 7.7752

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.7G092400.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	156.9	8.3e-49	6	133	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrF+Ptd elv++yLk+kv gk+l++ ++i+evdi+k+ PwdLp k++ +++ +wyfF+++++ky+tg r +ra + gyWkatgkd+ Prupe.7G092400.3.p 6 LPPGFRFSPTDVELVQYYLKRKVMGKRLHF-NFIAEVDIHKYAPWDLPeKSCWQGDLKWYFFCPTSRKYPTGARVKRANECGYWKATGKDR 95 79************************99.99***********656666788****************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +vl +ge+ g ktL+f++grapkge+tdWvmheyrle Prupe.7G092400.3.p 96 SVLY-NGEVSGWIKTLIFHRGRAPKGERTDWVMHEYRLE 133 .999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-57	4	155	IPR003441	NAC domain
PROSITE profile	PS51005	54.093	6	155	IPR003441	NAC domain
Pfam	PF02365	7.9E-25	7	132	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MRKSPLPPGF RFSPTDVELV QYYLKRKVMG KRLHFNFIAE VDIHKYAPWD LPEKSCWQGD 60 LKWYFFCPTS RKYPTGARVK RANECGYWKA TGKDRSVLYN GEVSGWIKTL IFHRGRAPKG 120 ERTDWVMHEY RLEAKNLADS DVLQDSYVIC MIFQKDGPGP RNGAEYGAPF KEEDWTDDEA 180 EICSEAVPHA NMPEPNLVVP SNYNSSIITS THSPEVIMLQ WRSLMFPMMI FCQC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-46	6	155	15	168	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppe.20238	1e-149	fruit

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the epidermal cells of the root apical region. {ECO:0000269\|PubMed:20388856}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250\|UniProtKB:Q9C8W9}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.7G092400.3.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020426054.1	1e-136	NAC domain-containing protein 82
Swissprot	Q9FY82	3e-85	NAC82_ARATH; NAC domain-containing protein 82
TrEMBL	A0A251N940	1e-177	A0A251N940_PRUPE; Uncharacterized protein
STRING	EMJ05887	1e-162	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64060.1	2e-88	NAC domain containing protein 103

Link Out ? help Back to Top
Phytozome	Prupe.7G092400.3.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Deeken R, et al. Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments. Plant J., 2008. 55(5): p. 746-59 [PMID:18485061] Ohbayashi I, et al. Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis. Plant Cell, 2017. 29(10): p. 2644-2660 [PMID:28899981]