PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.7G039800.1.p

Common Name

PRUPE_ppa016095mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 243aa MW: 27311 Da PI: 9.2725

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.7G039800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.4	1.5e-14	71	122	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR+++Ns ++ Lr+llP + ++kKls + ++ +YI +Lq Prupe.7G039800.1.p 71 KKLNHNASERDRRKKMNSLYSSLRSLLPVD---QGKKLSIPNTISHVLKYIPELQ 122 6789************************...*****************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.687	70	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-11	71	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.93E-4	71	126	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.5E-11	71	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.15E-14	71	138	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.5E-8	76	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MLALSPPLFS TIAWPSEDLL SHDQNYFYRD SSIDQSAESF LHILPSHQPQ VDLDRSTTIS 60 GDYSGVSTMA KKLNHNASER DRRKKMNSLY SSLRSLLPVD QGKKLSIPNT ISHVLKYIPE 120 LQKLVEGLIR KRGELLSRAC KQEAAMHEEK RIKSTARSSS SAVSTYRLSD RAVAIQISTL 180 KTHNNLLSEI LLNLEEEGLQ VLNASSFQSS GGRVFYNIHL QVERADRLEC KNLSEKLMSF 240 YA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.7G039800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007202904.1	1e-178	transcription factor ORG2
TrEMBL	M5W4A4	1e-176	M5W4A4_PRUPE; Uncharacterized protein
STRING	EMJ04103	1e-177	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2402	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	1e-41	bHLH family protein

Link Out ? help Back to Top
Phytozome	Prupe.7G039800.1.p
Entrez Gene	18769083