PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.7G032000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 208aa MW: 24446.7 Da PI: 6.561 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49.3 | 6.4e-16 | 12 | 53 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i n+ r+ tf kR++ i KKA ELS LC+++v++i++ ++ Prupe.7G032000.1.p 12 IPNEGTRKMTFRKRKKSIYKKADELSKLCGIDVCLIVYEADQ 53 779999*******************************98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 14.661 | 2 | 62 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.2E-7 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 1.94E-15 | 3 | 49 | No hit | No description |
PRINTS | PR00404 | 5.2E-7 | 4 | 24 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.14E-16 | 6 | 85 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-15 | 12 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-7 | 24 | 39 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-7 | 39 | 60 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MVAPRRSSLE LIPNEGTRKM TFRKRKKSIY KKADELSKLC GIDVCLIVYE ADQKKGRAVQ 60 PETWPRDPTQ FKRILNKYKD SKDTSTPGLK RNFDMSDFYE DKKDHVDEDD EKFQNLGERI 120 FEGEYPTKFQ NLGKKIFEEE YPTWDDRIDD FSKDELTELI ASLESKIQVA TKKIDCMERY 180 MGFAKKQNQS LVREEINHDE QPIKSLL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 22 | 26 | RKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.7G032000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020424421.1 | 1e-152 | agamous-like MADS-box protein AGL82 | ||||
TrEMBL | A0A251N996 | 1e-151 | A0A251N996_PRUPE; Uncharacterized protein | ||||
STRING | XP_008240673.1 | 1e-134 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14708 | 5 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 7e-22 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.7G032000.1.p |