PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

Prupe.7G031800.2.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

M-type_MADS

Protein Properties

Length: 234aa MW: 27270 Da PI: 8.7179

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.7G031800.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	51.2	1.6e-16	12	54	3	45
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i n+ r+ tf kR++ i KKA ELS LC+++v++i+++ ++k Prupe.7G031800.2.p 12 IPNEGTRKMTFRKRKKSIYKKADELSKLCGIDVCLIVYAADQK 54 779999*********************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	14.591	2	62	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.2E-8	2	61	IPR002100	Transcription factor, MADS-box
CDD	cd00120	3.00E-15	3	55	No hit	No description
PRINTS	PR00404	1.2E-6	4	24	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.89E-16	7	86	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.0E-15	12	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-6	24	39	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-6	39	60	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MVAPRRTCLE LIPNEGTRKM TFRKRKKSIY KKADELSKLC GIDVCLIVYA ADQKKGRAVQ 60 PETWPRDPNQ FKRILNKYKD SKDTSTPRLK RNFIMSDFYE DKKDHVDEDD EKFQNLGKKI 120 FEGEYPTKFQ NLGKKISEEE YPRWDDRIDD FSQDELTELI ASLESKIQVA TKRIDSMERY 180 MGFAKKQNQS LVREETNHDE QPYQVPALMS PPSLVHYPML PSAWVSSSES AKS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	22	26	RKRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.7G031800.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007203683.2	1e-174	agamous-like MADS-box protein AGL82
TrEMBL	A0A251N636	1e-173	A0A251N636_PRUPE; Uncharacterized protein
STRING	XP_008240673.1	1e-152	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	4e-22	M-type_MADS family protein

Link Out ? help Back to Top
Phytozome	Prupe.7G031800.2.p