PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Prupe.7G030800.1.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

M-type_MADS

Protein Properties

Length: 286aa MW: 33308.2 Da PI: 8.5553

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.7G030800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	50.4	2.9e-16	73	114	3	44
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i n+ r+ tf kR++ i KKA ELS LCd++v++i++ ++ Prupe.7G030800.1.p 73 IPNEGTRKMTFRKRKKSIYKKADELSKLCDIDVCLIVYEADQ 114 779999*******************************98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.8E-8	63	122	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	14.872	63	123	IPR002100	Transcription factor, MADS-box
CDD	cd00120	2.15E-16	64	110	No hit	No description
PRINTS	PR00404	1.4E-7	65	85	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.22E-16	67	145	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.7E-15	73	115	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-7	85	100	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-7	100	121	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MPFFSNIYNE LSLASIRPVY LNHVDMHIWK RIGVEVFLAP WLCTLGKGMF QLCTSLFFAK 60 DMVAPQRRSL ELIPNEGTRK MTFRKRKKSI YKKADELSKL CDIDVCLIVY EADQKKGRAV 120 QPETWPRDPT QFKRILNKYK DSKDMPAPGL KRNFDMSDFY EDKKDHMDND DEKFQNLGKN 180 PTKFQNLGKK ISEEEYPTWN DRIDDFSQDE LTKLIASLES KIQVATKKID SMERYMGFAK 240 TQNQSLVREE TNHDEQPAYQ VPALMSPPSL VHYPMLPSAW VSRSE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	83	87	RKRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.7G030800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020423472.1	1e-166	agamous-like MADS-box protein AGL82
Refseq	XP_020423473.1	1e-166	agamous-like MADS-box protein AGL82
TrEMBL	A0A251N630	0.0	A0A251N630_PRUPE; Uncharacterized protein
STRING	XP_008240673.1	1e-147	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14708	5	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	1e-21	M-type_MADS family protein

Link Out ? help Back to Top
Phytozome	Prupe.7G030800.1.p