PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

G2-like

Protein Properties

Length: 324aa MW: 34711.7 Da PI: 6.948

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.7G027500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.6	1.9e-30	109	162	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Prupe.7G027500.1.p 109 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 162 59*****************.******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.23E-20	106	166	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.059	106	165	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-30	108	167	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.6E-24	110	162	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-7	112	161	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MREDESNWFS RWEEELPSPE ELMPLSQTLI TPDLALAFDI RNNNPNNPSS PQNQQPPQPP 60 QPPHTPPPPP PSSLPPATPT HPNSSAEFAD SADLGSGAGG EEPARTLKRP RLVWTPQLHK 120 RFVDAVAHLG IKNAVPKTIM QLMSVDGLTR ENVASHLQKY RLYLKRMQGL SGGGSGGGGG 180 GGGGLAASAD PATDHLFASS PVPAHFLHPH PGGRPNSEHF MPFVPVALQQ HHHQQQQQQQ 240 QMAAAAAAAV AAHPQYHRQV GHFGSPPNGQ FEHPFLARQS SQPVHRMGAP LHNPVPGSYV 300 EDLESANATG GRKVLTLFPT GED*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	1e-31	109	165	1	57	Transcription factor LUX
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, leaves, stems, petioles, filaments, stigma, pedicels, sepals, anthers, petals, and siliques. {ECO:0000269\|PubMed:20331973}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269\|PubMed:20331973}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.7G027500.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269\|PubMed:20331973}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007203675.1	0.0	transcription factor PCL1
Swissprot	O22210	3e-64	MYBC1_ARATH; Transcription factor MYBC1
TrEMBL	M5VU33	0.0	M5VU33_PRUPE; Uncharacterized protein
STRING	EMJ04874	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8542	30	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10760.1	1e-85	G2-like family protein

Link Out ? help Back to Top
Phytozome	Prupe.7G027500.1.p
Entrez Gene	18771699

Publications ? help Back to Top
Sardesai N,Laluk K,Mengiste T,Gelvin S The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium. Plant Signal Behav, 2018. [PMID:24785741]