PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G016400.1.p
Common NamePRUPE_ppa023023mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Dof
Protein Properties Length: 475aa    MW: 51461.9 Da    PI: 7.569
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G016400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.33.3e-38125184261
              zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                         ++k l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++r vPvG+grrknk+ 
  Prupe.7G016400.1.p 125 PDKVLPCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRSVPVGAGRRKNKHL 184
                         78999*****************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-29117182IPR003851Zinc finger, Dof-type
PfamPF027011.8E-31126183IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.491129183IPR003851Zinc finger, Dof-type
PROSITE patternPS013610131167IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MYVKAKAISF CGDMSETESR SNENSNDIKL FGRTIPLLQT QIAAITCKNS QVPPKSQFMD  60
SCTELTKAEA DGPCAENSVQ AGTSAICKEE EKSRMQVNEA RVNAKSNSKQ AENRILEQEE  120
DFQKPDKVLP CPRCNSLDTK FCYFNNYNVN QPRHFCKNCQ RYWTAGGTMR SVPVGAGRRK  180
NKHLASQYHQ IIVSSDGVPS TRLETTDSIN HQLLSCSKSS STFGLPDRAG TVLKFGHEAP  240
LCESMDTVVN LRDLRTCVEI GSVSGRESGD EPSCVSSVTA CGNQGSELSK NILQRDGIGL  300
QGSCSEPNIS HPLNYYPIAP LVFRWNPGWR NAAPPAAPQH SQSICVQNCT TPNQVQWYPT  360
PVLVVPGPCP QSIPLQTVPA PSWGCMPVCP AGMGNLLLSG SNGCVSPSSS TSNSCCSGNG  420
SPTLGKHSRD SNIMDEEKSE NRVLVPKPLR VDDPDEASKS PIWASLGIKR DLKT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G016400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2535430.0AC253543.1 Prunus persica cultivar Lovell clone JGIBIXB-13M5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020424707.10.0cyclic dof factor 3
TrEMBLA0A251N5240.0A0A251N524_PRUPE; Uncharacterized protein
STRINGEMJ046620.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35023165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.22e-44cycling DOF factor 2