PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G011300.1.p
Common NamePRUPE_ppa024802mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 264aa    MW: 28499.7 Da    PI: 6.7672
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G011300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.55.1e-39531541101
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar+ dPvyG+v++il+lqqq+++l
  Prupe.7G011300.1.p  53 PCGACKFLRRKCISGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPLNRRQDAVVTISYEAQARLADPVYGCVSTILALQQQVASL 143
                         7***********************9989*************************************************************** PP

              DUF260  91 kaelallkeel 101
                         +aela+++++l
  Prupe.7G011300.1.p 144 QAELAMVQTQL 154
                         ******99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.92352154IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-3853151IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MADQPAQGDH CTSESRRKGT SGRAGRPASN TEAAATTNNT STSSTVVVSG AAPCGACKFL  60
RRKCISGCIF APHFGSDQGA ARFAAVHKVF GASNVSKLLL HIPLNRRQDA VVTISYEAQA  120
RLADPVYGCV STILALQQQV ASLQAELAMV QTQLINSRFA FANALQISTQ QRQQHQKQQQ  180
QQQQHEQQQN MALMLQPAYS NSSSASTNLI NMCSFTSNFD LAAETAPSSQ SLDPLQLSRP  240
SQDEEDDEEE SQVPLMFAND RYT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-38511699124LOB family transfactor Ramosa2.1
5ly0_B2e-38511699124LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G011300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007203508.10.0LOB domain-containing protein 20
SwissprotQ9SRV39e-80LBD20_ARATH; LOB domain-containing protein 20
TrEMBLM5VTK50.0M5VTK5_PRUPE; Uncharacterized protein
STRINGEMJ047070.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.12e-65LOB domain-containing protein 20