PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.7G001400.1.p | ||||||||
Common Name | PRUPE_ppa005770mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 460aa MW: 51029.4 Da PI: 5.9741 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.2 | 5.2e-56 | 18 | 148 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdee+++ yL++kv ++++ + +i e+d++k+ePwdLpkk+k +ekewyfF++rd+ky+tg r+nrat+sgyWkatgkdke Prupe.7G001400.1.p 18 LPPGFRFHPTDEEIITSYLTEKVIDSSFVA-IAIGEADLNKCEPWDLPKKAKMGEKEWYFFCQRDRKYPTGMRTNRATESGYWKATGKDKE 107 79*************************988.78***************99999************************************** PP NAM 92 vlskkgel...vglkktLvfykgrapkgektdWvmheyrle 129 ++++kg++ vg+kktLvfy+grapkgekt+Wvmheyrle Prupe.7G001400.1.p 108 IFNNKGKAgclVGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 148 ***85555666****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.93E-63 | 14 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.981 | 18 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-29 | 19 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 460 aa Download sequence Send to blast |
MEQNMVVNRG AEDQLIELPP GFRFHPTDEE IITSYLTEKV IDSSFVAIAI GEADLNKCEP 60 WDLPKKAKMG EKEWYFFCQR DRKYPTGMRT NRATESGYWK ATGKDKEIFN NKGKAGCLVG 120 MKKTLVFYRG RAPKGEKTNW VMHEYRLEGK ISQYTNLSKA AKDEWVVCRV FHKNMGLKKI 180 NNTPTRMNSF GDHDLLDYSS LPPLMDPTSF NDNLMNNNDN KACGYGDHDV KPGANLASTA 240 PSLSSAKASS SDDHHAINNN NYLSYFSIGG SGGQVQKPNY SFQVQPTNSY YQATSLSNNP 300 NMLYPHHHQF QNPNPNPNPS SFWFQPNPNN SDYFQQGMIR VTNNTTSDHD EDDQAMLRAI 360 AAANNSNMNN ETSSSAAAGF GSSGGLARQC KVEQFSSAPE SMFSLSQDTG VSTDINTTEI 420 SSSLVSSKQE LGSAADNCSS YDQRPSVVPI SDIEGLWDF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-52 | 16 | 179 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-52 | 16 | 179 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-52 | 16 | 179 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-52 | 16 | 179 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-52 | 16 | 179 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-52 | 16 | 179 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.16151 | 0.0 | fruit |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00518 | DAP | Transfer from AT5G18270 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.7G001400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF198125 | 7e-82 | KF198125.1 Malus hupehensis NAC domain protein (NAC112) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020424734.1 | 0.0 | NAC domain-containing protein 100 | ||||
TrEMBL | A0A251N494 | 0.0 | A0A251N494_PRUPE; Uncharacterized protein | ||||
STRING | XP_008240446.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF409 | 34 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.1 | 1e-110 | Arabidopsis NAC domain containing protein 87 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.7G001400.1.p |
Entrez Gene | 18771562 |