PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G341000.1.p | ||||||||
Common Name | PRUPE_ppa022417mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | Trihelix | ||||||||
Protein Properties | Length: 679aa MW: 76474.7 Da PI: 6.6806 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 48.5 | 2.2e-15 | 151 | 210 | 2 | 66 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 W+++e laL+++r+ m++++ + We+vs+k++e gf+rs+++Ckek+e+ ++++ +i+ Prupe.6G341000.1.p 151 WSNDELLALLRIRSTMDNWFPEF-----TWEHVSRKLAELGFKRSAEKCKEKFEEESRYFNNINF 210 ********************998.....9*******************************99875 PP | |||||||
2 | trihelix | 97.4 | 1.3e-30 | 506 | 595 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++evlaLi++r ++ ++ ++++ k+plWe++s+ m e+g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql Prupe.6G341000.1.p 506 RWPRDEVLALINLRCSLFNNGSADQdkngvVKAPLWERISQGMLEKGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SLDSRTCPYFHQLS 595 8********************9865556669********************************************8.9999********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 6.5 | 147 | 204 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 4.9E-10 | 149 | 211 | No hit | No description |
PROSITE profile | PS50090 | 6.377 | 150 | 202 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.24 | 503 | 570 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 1.1E-18 | 505 | 595 | No hit | No description |
CDD | cd12203 | 3.77E-24 | 505 | 575 | No hit | No description |
PROSITE profile | PS50090 | 6.47 | 506 | 568 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001158 | Molecular Function | enhancer sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 679 aa Download sequence Send to blast |
MFDGVPAEQL HQFIAASRTS LPLPLPLPLP LSSFPAALHA SSSPPPNINT FSAAAAAAAA 60 PFDPNYNNNP SHHHLHHHHH HHQLLLQPQP QPQPHQHQLL NNPGVQLHRQ SATPKNHEEK 120 KESNLVSINN NLEIERERSS SISQVPISDP WSNDELLALL RIRSTMDNWF PEFTWEHVSR 180 KLAELGFKRS AEKCKEKFEE ESRYFNNINF TKNYRFLSDL EELCHGGDDQ NPDQAAAGAE 240 NKNQQKVEKP SNNEGDEDSR CQILDEDSTR NETVAGSKEF DDQDKEKEVV ERTKSNVVRK 300 RKRQRRFEML KGFCEDIVNR MMAQQEEMHS KLLEDMVKRS EEKLAREEAW KKQEMDRMNK 360 ELEIMAHEQA IAGDRQTTII KFLKKFASSS SSSTSSEPSP DHDHRTNSSS LINHARNPNH 420 PTCSQEKEPA SSTISQKPGT SSHTPNNPST PISLTESLAP QSPSSSTLAP TPTIPKVPIP 480 PENPSSDHLN TQNLTSNEDK QDLGKRWPRD EVLALINLRC SLFNNGSADQ DKNGVVKAPL 540 WERISQGMLE KGYKRSAKRC KEKWENINKY FRKTKDVNKK RSLDSRTCPY FHQLSTLYNQ 600 GILVSPSDHI QGPDDQTRSA SPENQSLASP VVPHTGLDSS DQGRSSADDD LSKHNIIGEG 660 EKNNTVQPVP AAAFDFEF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 299 | 304 | KRKRQR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00011 | PBM | Transfer from AT5G28300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G341000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007208598.1 | 0.0 | trihelix transcription factor GTL2 | ||||
Swissprot | Q8H181 | 1e-104 | GTL2_ARATH; Trihelix transcription factor GTL2 | ||||
TrEMBL | M5W7S8 | 0.0 | M5W7S8_PRUPE; Uncharacterized protein | ||||
STRING | EMJ09797 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5043 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28300.1 | 1e-101 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G341000.1.p |
Entrez Gene | 18775068 |
Publications ? help Back to Top | |||
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