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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G340600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | CPP | ||||||||
Protein Properties | Length: 755aa MW: 82350.1 Da PI: 6.2854 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 47.4 | 3.7e-15 | 486 | 522 | 3 | 39 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 +k+CnCk+skClk+YC+Cfaag +C e C+C++C+Nk Prupe.6G340600.1.p 486 CKRCNCKRSKCLKLYCDCFAAGLYCIEPCSCQECFNK 522 79**********************************8 PP | |||||||
2 | TCR | 50.6 | 3.9e-16 | 570 | 609 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnC+ks ClkkYCeCf+ g+ Cs C+C +CkN+ Prupe.6G340600.1.p 570 RHKRGCNCRKSVCLKKYCECFQGGAGCSILCRCIGCKNTF 609 589***********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 2.2E-16 | 484 | 525 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 34.388 | 485 | 610 | IPR005172 | CRC domain |
Pfam | PF03638 | 7.6E-11 | 487 | 522 | IPR005172 | CRC domain |
SMART | SM01114 | 1.0E-16 | 570 | 611 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.2E-11 | 572 | 608 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 755 aa Download sequence Send to blast |
MDTPLKNQTT TPTTPLPSKY EDSPVFNYIS NLSPIEPVKS RGNDHTFNSL TFASLPSIFT 60 SPQNVSLGET RFSLRRHHSS EASNPESFQT PNPSDKLESV PVAVEQSYCG TKQPECFTPG 120 SSGTEVTNAI PAENLELAIE LSNTLKYSSG SPDRNVPCDA TDTVLETAAT PASLVQSVVH 180 HSEERHSSFE RETHLRRICG MEREKEAAAV DWTRLISDAS DLLNFDSTTI EESSDGEDPK 240 TVDPGAICFI SNILQDNHND MEVMESGPID SSEQYELGKF SNQSEGIGDL KETDEAPAIL 300 SRNLLDKLNV DDKCPKCIHS SCKHSSQSYA ISRRCLDFER AESHKRKSIC DTSGSYSVPL 360 QSNCEVTVVE KKLIRTTAGC DYSSSRLPGI GLHLNALATT SESNLSKVVN HETQASESQV 420 TETPNSKISS TCLTPSEVSR DESCKSEVHI AETPPEACAP VGVESDHSSP ENKRLKSQHV 480 GESLACKRCN CKRSKCLKLY CDCFAAGLYC IEPCSCQECF NKPIYENIVV EARRLIESRN 540 PLAFAPKVIG SINATPQFGE ETNSTPTSAR HKRGCNCRKS VCLKKYCECF QGGAGCSILC 600 RCIGCKNTFG RKDEAEESEI EEHKSRVRKK DAIDVSLGRV KDQDLPMTLP GICRPSGQLT 660 ASFSGKPKIF SLHSVLSSPQ PEKHLQVIPE EGTLEALDNS CSQPSGVKST SPNSKRVSPP 720 HSGSEFGSAA WRGGRKLVLR SIPPFPTLAS PRKH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 3e-17 | 487 | 607 | 12 | 120 | Protein lin-54 homolog |
5fd3_B | 3e-17 | 487 | 607 | 12 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G340600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007208201.2 | 0.0 | protein tesmin/TSO1-like CXC 2 isoform X1 | ||||
TrEMBL | A0A251NZQ1 | 0.0 | A0A251NZQ1_PRUPE; Uncharacterized protein | ||||
STRING | XP_008218499.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2619 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 5e-85 | TESMIN/TSO1-like CXC 2 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G340600.1.p |