PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G316000.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GATA
Protein Properties Length: 149aa    MW: 15992.2 Da    PI: 10.1895
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G316000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.49.7e-193265134
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                        Cs C tt+TplWR gp g+k+LCnaCG+++rk+g
  Prupe.6G316000.1.p 32 CSDCMTTETPLWRGGPAGPKSLCNACGIRHRKRG 65
                        ********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.9E-172677IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.1782680IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.61E-132868No hitNo description
Gene3DG3DSA:3.30.50.102.9E-163066IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.96E-133166No hitNo description
PfamPF003201.5E-163265IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403257IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MMNWGRRFVA LDSVLGRKEP FPQAMNGNKK RCSDCMTTET PLWRGGPAGP KSLCNACGIR  60
HRKRGIPTVS LMSKAPKRRK EKICGGSSST ITTTYNIAAS ATYNNASATT AKSTFGSGGG  120
GINLNEPPEV RFVGFGEEVF LQDSQAEGE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16179RKRGIPTVSLMSKAPKRRK
27379KAPKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G316000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007206217.21e-107GATA transcription factor 17
TrEMBLA0A251NYE11e-106A0A251NYE1_PRUPE; Uncharacterized protein (Fragment)
STRINGXP_008245759.11e-103(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.17e-18GATA transcription factor 16