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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G303900.1.p | ||||||||
Common Name | PRUPE_ppa022799mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 244aa MW: 27808 Da PI: 10.1635 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.9 | 8.6e-16 | 11 | 54 | 3 | 46 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 i n+s r+ tf kR+ g++KK +ELS+LCd+ ++ +i+s+ l Prupe.6G303900.1.p 11 IANDSTRKATFKKRKRGLIKKISELSTLCDVPACALIYSQYESL 54 89*************************************87665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 17.156 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.5E-23 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.4E-23 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 9.92E-32 | 2 | 83 | No hit | No description |
PRINTS | PR00404 | 1.8E-10 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-15 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-10 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-10 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043078 | Cellular Component | polar nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MTRKKVKLAY IANDSTRKAT FKKRKRGLIK KISELSTLCD VPACALIYSQ YESLPDIWPS 60 PSGVQRVIAQ FRNMPEMEQG RKMFNQETFL RQRIVKSHEQ LKRLRKENRE KEVSRVMFQT 120 LTGRPLQGLN MIDLNDLGWL IDQNVKELGE KIKSKREELL AQRNEVTMAA PNAAALPARA 180 GDHGMDLNMQ QPAMENTMQR PPWFSDVMTP QEPMGSGAAG GDEVLPFGDQ NHPAFWHNSP 240 FFH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVKLAYIANDSTRKATFKKRK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00553 | DAP | Transfer from AT5G48670 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G303900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007207095.1 | 0.0 | agamous-like MADS-box protein AGL80 | ||||
Swissprot | Q9FJK3 | 1e-55 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | M5W3J8 | 0.0 | M5W3J8_PRUPE; Uncharacterized protein | ||||
STRING | EMJ08294 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF452 | 33 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-57 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G303900.1.p |
Entrez Gene | 18774533 |
Publications ? help Back to Top | |||
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