PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G260700.1.p
Common NamePRUPE_ppa018432mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 328aa    MW: 36163 Da    PI: 7.3772
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G260700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000246183123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C + F++   L  H+++H
  Prupe.6G260700.1.p 61 YSCSFCRREFRSAQALGGHMNVH 83
                        99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.06E-65887No hitNo description
PROSITE profilePS5015711.2196188IPR007087Zinc finger, C2H2
SMARTSM003550.00986183IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEQARYWMWA KRKHNSLSSS QHDHLQVPIS NPSNDDSWEE QAFAEDAAGP LGGCIWPPRS  60
YSCSFCRREF RSAQALGGHM NVHRRDRARL KQSPNDETTL QNHHHPDDRS VQNHNPFSSS  120
SLGSFQYPSH QVCALVYNPN NPSSDPGATI ASSSPSSGSR VSAQLPCKEN CADQTLKIPP  180
SSSASLSFPQ SWSILGTNRN NYDKSVARNI IEAEKISEAV ESGCRAKGDH HVTSTTDLHN  240
LSVSLNLVVR CARPSVSGDE DKAIISCKRR RTEDVPSSTP FFLKSGSVDK VHHLQSEGFE  300
LSCTSSIEDL DLELRLGDRP KVIKVDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-125683229superman protein
2l1o_A1e-125683229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G260700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020422185.10.0zinc finger protein 10
TrEMBLA0A251NW160.0A0A251NW16_PRUPE; Uncharacterized protein
STRINGEMJ076600.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.11e-26zinc-finger protein 10